-
-
- // dan test dan changed!
- if (sh.action.toLowerCase().contains("rna structure prediction"))
- {
-
- List<AlignCalcWorkerI> clnts = alignFrame.getViewport()
- .getCalcManager()
- .getRegisteredWorkersOfClass(RNAalifoldClient.class);
- if (clnts == null || clnts.size() == 0)
- {
- if (!processParams(sh, editParams))
- {
- return;
- }
- RNAalifoldClient worker;
- alignFrame
- .getViewport()
- .getCalcManager()
- .registerWorker(
- worker = new RNAalifoldClient(sh, alignFrame,
- this.preset, paramset));
- alignFrame.getViewport().getCalcManager().startWorker(worker);
- }
- else
- {
- RNAalifoldClient worker = (RNAalifoldClient) clnts.get(0);
- if (editParams)
- {
- paramset = worker.getArguments();
- preset = worker.getPreset();
- }
-
- if (!processParams(sh, editParams, true))
- {
- return;
- }
-
- // reinstate worker if it was blacklisted (might have happened due to
- // invalid parameters)
- alignFrame.getViewport().getCalcManager().workerMayRun(worker);
- worker.updateParameters(this.preset, paramset);
- }
-
- }