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fix scrolltoposition behaviour and new alignmentPanel api
author
jprocter
<Jim Procter>
Fri, 18 Feb 2011 17:31:29 +0000
(17:31 +0000)
committer
jprocter
<Jim Procter>
Fri, 18 Feb 2011 17:31:29 +0000
(17:31 +0000)
src/jalview/appletgui/AlignmentPanel.java
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diff --git
a/src/jalview/appletgui/AlignmentPanel.java
b/src/jalview/appletgui/AlignmentPanel.java
index
c466b86
..
b275547
100755
(executable)
--- a/
src/jalview/appletgui/AlignmentPanel.java
+++ b/
src/jalview/appletgui/AlignmentPanel.java
@@
-22,9
+22,10
@@
import java.awt.event.*;
import java.util.Hashtable;
import java.util.Vector;
import java.util.Hashtable;
import java.util.Vector;
+import jalview.api.AlignmentViewPanel;
import jalview.datamodel.*;
import jalview.datamodel.*;
-public class AlignmentPanel extends Panel implements AdjustmentListener
+public class AlignmentPanel extends Panel implements AdjustmentListener, AlignmentViewPanel
{
public AlignViewport av;
{
public AlignViewport av;
@@
-272,7
+273,7
@@
public class AlignmentPanel extends Panel implements AdjustmentListener
return false;
}
SequenceI seq = av.alignment.getSequenceAt(seqIndex);
return false;
}
SequenceI seq = av.alignment.getSequenceAt(seqIndex);
- int[] r = results.getResults(seq, seq.getStart(), seq.getEnd());
+ int[] r = results.getResults(seq, 0,av.alignment.getWidth());
if (r == null)
{
if (av.applet.debug) {// DEBUG
if (r == null)
{
if (av.applet.debug) {// DEBUG
@@
-890,4
+891,10
@@
public class AlignmentPanel extends Panel implements AdjustmentListener
alabels.setScrollOffset(apvscroll.getValue());
}
alabels.setScrollOffset(apvscroll.getValue());
}
+ @Override
+ public AlignmentI getAlignment()
+ {
+ return av.alignment;
+ }
+
}
}