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Modified output to reduce HTML file size
author
amwaterhouse
<Andrew Waterhouse>
Wed, 1 Dec 2004 17:04:03 +0000
(17:04 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Wed, 1 Dec 2004 17:04:03 +0000
(17:04 +0000)
src/jalview/io/HTMLOutput.java
patch
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diff --git
a/src/jalview/io/HTMLOutput.java
b/src/jalview/io/HTMLOutput.java
index
8eef36f
..
b42547a
100755
(executable)
--- a/
src/jalview/io/HTMLOutput.java
+++ b/
src/jalview/io/HTMLOutput.java
@@
-29,7
+29,8
@@
public class HTMLOutput
out.println("<HTML>");
\r
out.println("<style type=\"text/css\">");
\r
out.println("<!--");
\r
out.println("<HTML>");
\r
out.println("<style type=\"text/css\">");
\r
out.println("<!--");
\r
- out.println("td {font-family: \"Courier New\", Courier, mono; font-size: medium;}");
\r
+ out.println("td {font-family: \"Courier New\", Courier, mono; font-size: medium;");
\r
+ out.println(" font-size: medium; text-align: center; }");
\r
out.println("-->");
\r
out.println("</style>");
\r
out.println("<BODY>");
\r
out.println("-->");
\r
out.println("</style>");
\r
out.println("<BODY>");
\r
@@
-45,22
+46,29
@@
public class HTMLOutput
for (int res = 0; res < seq.getLength(); res++)
\r
{
\r
color = sr.getResidueBoxColour(cs, seq, res);
\r
for (int res = 0; res < seq.getLength(); res++)
\r
{
\r
color = sr.getResidueBoxColour(cs, seq, res);
\r
- Integer.toHexString(color.getRed());
\r
\r
\r
- out.println("<td bgcolor=\"#"
\r
+ if(color.getRGB()<-1)
\r
+ {
\r
+ out.println("<td bgcolor=\"#"
\r
+ Integer.toHexString(color.getRed())
\r
+ Integer.toHexString(color.getGreen())
\r
+ Integer.toHexString(color.getBlue())
\r
+ Integer.toHexString(color.getRed())
\r
+ Integer.toHexString(color.getGreen())
\r
+ Integer.toHexString(color.getBlue())
\r
- +"\"><center>"+seq.getCharAt(res)+"</center></td>");
\r
+ + "\">"+seq.getCharAt(res)+"</td>");
\r
+ }
\r
+ else
\r
+ out.println("<td>"+seq.getCharAt(res)+"</td>");
\r
+
\r
}
\r
\r
out.println("</tr>");
\r
}
\r
//////////////
\r
}
\r
\r
out.println("</tr>");
\r
}
\r
//////////////
\r
- out.println("</td></tr></table>");
\r
- out.println("</table>\n</body>\n</html>");
\r
+ out.println("</table>");
\r
+ out.println("</td></tr></table>\n</body>\n</html>");
\r
\r
out.close();
\r
\r
out.close();
\r
+
\r
+ jalview.util.BrowserLauncher.openURL( choice );
\r
}
\r
catch(Exception ex){}
\r
}
\r
}
\r
catch(Exception ex){}
\r
}
\r