- public int groupX, groupY, groupendX, groupendY;\r
+ if(displaySearch)\r
+ {\r
+ for(int r=0; r<searchResults.length; r+=3)\r
+ {\r
+ int searchSeq = searchResults[r];\r
+ int searchStart = searchResults[r+1];\r
+ int searchEnd = searchResults[r+2];\r
+\r
+ if (searchSeq >= y1 && searchSeq <= y2)\r
+ {\r
+ SequenceRenderer ssr = (SequenceRenderer) sr;\r
+ ssr.drawHighlightedText(g, av.getAlignment().getSequenceAt(searchSeq),\r
+ searchStart,\r
+ searchEnd,\r
+ (int) ( (searchStart - startx) * charWidth),\r
+ offset +\r
+ AlignmentUtil.getPixelHeight(starty, searchSeq,\r
+ charHeight),\r
+ (int) charWidth,\r
+ charHeight);\r
+\r
+ }\r
+ }\r
+ }\r