- test(new File(PfamFile));
- AppletFormatAdapter af = new AppletFormatAdapter();
- AlignmentI al = af.readFile(PfamFile, af.FILE, new IdentifyFile().Identify(PfamFile, af.FILE));
- int numpdb=0;
- for (SequenceI sq:al.getSequences())
+ testFileIOwithFormat(new File(PfamFile), "STH");
+ }
+ @Test
+ public void pfamFileDataExtraction() throws Exception
+ { AppletFormatAdapter af = new AppletFormatAdapter();
+ AlignmentI al = af.readFile(PfamFile, af.FILE,
+ new IdentifyFile().Identify(PfamFile, af.FILE));
+ int numpdb = 0;
+ for (SequenceI sq : al.getSequences())
+ {
+ if (sq.getPDBId() != null)