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JAL-629 slight tidy up
author
Ben Soares
<b.soares@dundee.ac.uk>
Thu, 2 Mar 2023 23:02:27 +0000
(23:02 +0000)
committer
Ben Soares
<b.soares@dundee.ac.uk>
Thu, 2 Mar 2023 23:02:27 +0000
(23:02 +0000)
src/jalview/ws/dbsources/EBIAlfaFold.java
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diff --git
a/src/jalview/ws/dbsources/EBIAlfaFold.java
b/src/jalview/ws/dbsources/EBIAlfaFold.java
index
8609046
..
8592bd3
100644
(file)
--- a/
src/jalview/ws/dbsources/EBIAlfaFold.java
+++ b/
src/jalview/ws/dbsources/EBIAlfaFold.java
@@
-154,20
+154,12
@@
public class EBIAlfaFold extends EbiFileRetrievedProxy
@Override
public AlignmentI getSequenceRecords(String queries) throws Exception
{
@Override
public AlignmentI getSequenceRecords(String queries) throws Exception
{
- // used by the SequenceFetcher. Put forSequencesOnly to true (don't open
- // structure viewer later)
- return getSequenceRecords(queries, null, true);
+ return getSequenceRecords(queries, null);
}
public AlignmentI getSequenceRecords(String queries, String retrievalUrl)
throws Exception
{
}
public AlignmentI getSequenceRecords(String queries, String retrievalUrl)
throws Exception
{
- return getSequenceRecords(queries, retrievalUrl, false);
- }
-
- public AlignmentI getSequenceRecords(String queries, String retrievalUrl,
- boolean forSequencesOnly) throws Exception
- {
AlignmentI pdbAlignment = null;
String chain = null;
String id = null;
AlignmentI pdbAlignment = null;
String chain = null;
String id = null;
@@
-226,8
+218,6
@@
public class EBIAlfaFold extends EbiFileRetrievedProxy
stopQuery();
throw (ex);
}
stopQuery();
throw (ex);
}
- // distinguish between AlphaFold cif/pdb opened as structure file or fetched
- // as sequence/alignment
return pdbAlignment;
}
return pdbAlignment;
}