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default gap char is -. Getting ready for group select mode
author
amwaterhouse
<Andrew Waterhouse>
Fri, 3 Dec 2004 16:23:43 +0000
(16:23 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Fri, 3 Dec 2004 16:23:43 +0000
(16:23 +0000)
src/jalview/datamodel/Alignment.java
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diff --git
a/src/jalview/datamodel/Alignment.java
b/src/jalview/datamodel/Alignment.java
index
86f5914
..
abc7cf6
100755
(executable)
--- a/
src/jalview/datamodel/Alignment.java
+++ b/
src/jalview/datamodel/Alignment.java
@@
-12,7
+12,7
@@
public class Alignment implements AlignmentI
protected Vector sequences;
\r
protected Vector groups = new Vector();
\r
public Hashtable[] cons;
\r
protected Vector sequences;
\r
protected Vector groups = new Vector();
\r
public Hashtable[] cons;
\r
- protected char gapCharacter = '.';
\r
+ protected char gapCharacter = '-';
\r
\r
/** Make an alignment from an array of Sequences.
\r
*
\r
\r
/** Make an alignment from an array of Sequences.
\r
*
\r
@@
-24,17
+24,6
@@
public class Alignment implements AlignmentI
for (int i=0; i < seqs.length; i++)
\r
sequences.addElement(seqs[i]);
\r
\r
for (int i=0; i < seqs.length; i++)
\r
sequences.addElement(seqs[i]);
\r
\r
- SequenceGroup all = new SequenceGroup();
\r
- all.setName("Group 1");
\r
- groups.addElement(all);
\r
-
\r
- int i = 0;
\r
-
\r
- while (i < seqs.length) {
\r
- addToGroup(all,seqs[i]);
\r
- i++;
\r
- }
\r
-
\r
getWidth();
\r
}
\r
\r
getWidth();
\r
}
\r
\r