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JAL-2490 lookup sequence features for "labelClass"
author
gmungoc
<g.m.carstairs@dundee.ac.uk>
Thu, 18 May 2017 14:56:25 +0000
(15:56 +0100)
committer
gmungoc
<g.m.carstairs@dundee.ac.uk>
Thu, 18 May 2017 14:56:25 +0000
(15:56 +0100)
src/jalview/gui/TreePanel.java
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diff --git
a/src/jalview/gui/TreePanel.java
b/src/jalview/gui/TreePanel.java
index
35998eb
..
32c5702
100755
(executable)
--- a/
src/jalview/gui/TreePanel.java
+++ b/
src/jalview/gui/TreePanel.java
@@
-789,19
+789,17
@@
public class TreePanel extends GTreePanel
}
if (newname == null)
{
}
if (newname == null)
{
- SequenceFeature sf[] = sq.getSequenceFeatures();
- for (int i = 0; sf != null && i < sf.length; i++)
+ List<SequenceFeature> features = sq.getFeatures()
+ .getPositionalFeatures(labelClass);
+ for (SequenceFeature feature : features)
{
{
- if (sf[i].getType().equals(labelClass))
+ if (newname == null)
+ {
+ newname = feature.getDescription();
+ }
+ else
{
{
- if (newname == null)
- {
- newname = new String(sf[i].getDescription());
- }
- else
- {
- newname = newname + "; " + sf[i].getDescription();
- }
+ newname = newname + "; " + feature.getDescription();
}
}
}
}
}
}