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JAL-653 added missing pragma string to processing filter
author
Jim Procter
<jprocter@issues.jalview.org>
Tue, 10 Nov 2015 15:00:47 +0000
(15:00 +0000)
committer
Jim Procter
<jprocter@issues.jalview.org>
Tue, 10 Nov 2015 15:00:47 +0000
(15:00 +0000)
src/jalview/io/FeaturesFile.java
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diff --git
a/src/jalview/io/FeaturesFile.java
b/src/jalview/io/FeaturesFile.java
index
c6bc1dd
..
a670e6e
100755
(executable)
--- a/
src/jalview/io/FeaturesFile.java
+++ b/
src/jalview/io/FeaturesFile.java
@@
-705,6
+705,7
@@
public class FeaturesFile extends AlignFile
static
{
GFFPRAGMA = new HashMap<String, GffPragmas>();
static
{
GFFPRAGMA = new HashMap<String, GffPragmas>();
+ GFFPRAGMA.put("gff-version", GffPragmas.gff_version);
GFFPRAGMA.put("sequence-region", GffPragmas.sequence_region);
GFFPRAGMA.put("feature-ontology", GffPragmas.feature_ontology);
GFFPRAGMA.put("#", GffPragmas.hash);
GFFPRAGMA.put("sequence-region", GffPragmas.sequence_region);
GFFPRAGMA.put("feature-ontology", GffPragmas.feature_ontology);
GFFPRAGMA.put("#", GffPragmas.hash);
@@
-1510,6
+1511,7
@@
public class FeaturesFile extends AlignFile
/**
* this is only for the benefit of object polymorphism - method does nothing.
*/
/**
* this is only for the benefit of object polymorphism - method does nothing.
*/
+ @Override
public void parse()
{
// IGNORED
public void parse()
{
// IGNORED
@@
-1520,6
+1522,7
@@
public class FeaturesFile extends AlignFile
*
* @return error message
*/
*
* @return error message
*/
+ @Override
public String print()
{
return "USE printGFFFormat() or printJalviewFormat()";
public String print()
{
return "USE printGFFFormat() or printJalviewFormat()";