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JAL-1821 updated implementation of launchStructureViewer method to use currently...
author
tcofoegbu
<tcnofoegbu@dundee.ac.uk>
Tue, 4 Aug 2015 15:16:48 +0000
(16:16 +0100)
committer
tcofoegbu
<tcnofoegbu@dundee.ac.uk>
Tue, 4 Aug 2015 15:16:48 +0000
(16:16 +0100)
src/jalview/gui/StructureChooser.java
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diff --git
a/src/jalview/gui/StructureChooser.java
b/src/jalview/gui/StructureChooser.java
index
f456817
..
d5e4cbc
100644
(file)
--- a/
src/jalview/gui/StructureChooser.java
+++ b/
src/jalview/gui/StructureChooser.java
@@
-790,8
+790,18
@@
public class StructureChooser extends GStructureChooser
StructureViewer sViewer = new StructureViewer(ssm);
if (pdbEntriesToView.length > 1)
{
StructureViewer sViewer = new StructureViewer(ssm);
if (pdbEntriesToView.length > 1)
{
- sViewer.viewStructures(pdbEntriesToView, alignPanel.av.collateForPDB(pdbEntriesToView),
+ ArrayList<SequenceI[]> seqsMap = new ArrayList<SequenceI[]>();
+ for (SequenceI seq : sequences)
+ {
+ seqsMap.add(new SequenceI[]
+ { seq });
+ }
+ SequenceI[][] collatedSeqs = seqsMap.toArray(new SequenceI[0][0]);
+ sViewer.viewStructures(pdbEntriesToView, collatedSeqs,
alignPanel);
alignPanel);
+ // sViewer.viewStructures(pdbEntriesToView,
+ // alignPanel.av.collateForPDB(pdbEntriesToView),
+ // alignPanel);
}
else
{
}
else
{