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JAL-1644 improvment of finder logic to include the sequence description field
author
Charles Ofoegbu
<tcnofoegbu@dundee.ac.uk>
Mon, 2 Feb 2015 10:30:13 +0000
(10:30 +0000)
committer
Charles Ofoegbu
<tcnofoegbu@dundee.ac.uk>
Mon, 2 Feb 2015 10:30:13 +0000
(10:30 +0000)
src/jalview/analysis/Finder.java
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diff --git
a/src/jalview/analysis/Finder.java
b/src/jalview/analysis/Finder.java
index
96151d7
..
b253642
100644
(file)
--- a/
src/jalview/analysis/Finder.java
+++ b/
src/jalview/analysis/Finder.java
@@
-20,9
+20,12
@@
*/
package jalview.analysis;
*/
package jalview.analysis;
-import java.util.*;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SearchResults;
+import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceGroup;
-import jalview.datamodel.*;
+import java.util.Vector;
public class Finder
{
public class Finder
{
@@
-146,6
+149,18
@@
public class Finder
break;
}
}
break;
}
}
+
+ if (regex.search(seq.getDescription()))
+ {
+ idMatch.addElement(seq);
+ hasResults = true;
+ if (!findAll)
+ {
+ // stop and return the match
+ found = true;
+ break;
+ }
+ }
}
item = seq.getSequenceAsString();
}
item = seq.getSequenceAsString();