- /*
- * There will be better ways of doing this in the future, for now we'll use
- * the tried and tested MCview pdb mapping
+ /**
+ * create sequence structure mappings between each sequence and the given pdbFile (retrieved via the given protocol).
+ *
+ * @param sequence - one or more sequences to be mapped to pdbFile
+ * @param targetChains - optional chain specification for mapping each sequence to pdb (may be nill, individual elements may be nill)
+ * @param pdbFile - structure data resource
+ * @param protocol - how to resolve data from resource
+ * @return null or the structure data parsed as a pdb file