+ .getResidueColour(true, av.getResidueShading(), null, seq, 3,
+ null));
+
+ // unaffected by showBoxes setting
+ assertEquals(Color.pink, rcf.getResidueColour(false,
+ av.getResidueShading(), null, seq, 0, null)); // M
+ assertEquals(Color.green, rcf.getResidueColour(false,
+ av.getResidueShading(), null, seq, 2, null)); // T
+ assertEquals(Color.magenta, rcf.getResidueColour(false,
+ av.getResidueShading(), null, seq, 5, null)); // G
+ assertEquals(Color.orange, rcf.getResidueColour(false,
+ av.getResidueShading(), null, seq, 12, null)); // F