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JAL-1641 updated json help doc
author
tcofoegbu
<tcnofoegbu@dundee.ac.uk>
Tue, 11 Aug 2015 16:28:59 +0000
(17:28 +0100)
committer
tcofoegbu
<tcnofoegbu@dundee.ac.uk>
Tue, 11 Aug 2015 16:28:59 +0000
(17:28 +0100)
help/html/features/bioJsonFormat.html
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b/help/html/features/bioJsonFormat.html
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--- a/
help/html/features/bioJsonFormat.html
+++ b/
help/html/features/bioJsonFormat.html
@@
-23,13
+23,13
@@
<title>BioJSON-1.0</title>
</head>
<body>
<title>BioJSON-1.0</title>
</head>
<body>
- <h1>BioJSON</h1>
- BioJSON is a standardise JavaScript Object Notation (JSON) format for exchange of Bio-informatics Sequence Alignment data.
- BioJSON-1.0 schema/documentation is available at <a href="#">http://www.jalview.org/builds/develop/examples/biojson-doc/</a>.
- You can keep up to date with BioJSON development and latest news at <a href="#">https://github.com/jalview/biojson/wiki</a>.
+ <h1>BioJSON 1.0</h1>
+ BioJSON is a JavaScript Object Notation (JSON) specification for the representation and exchange of bioinformatics data.
+ The first version of the specification was developed in 2015 and implemented in Jalview 2.9. Find out more about BioJSON
+ at <a href="http://jalview.github.io/biojson/">http://jalview.github.io/biojson/</a>.
<h2>Features supported</h2>
<h2>Features supported</h2>
- Export/Import of the following alignment elements are supported in BioJSON-1.0:
+ Export and import of a single alignment along with it's properties listed below:
<ul>
<li>Alignment Annotations</li>
<li>Alignment Features</li>
<ul>
<li>Alignment Annotations</li>
<li>Alignment Features</li>
@@
-41,12
+41,12
@@
</ul>
<h2>Features not yet supported</h2>
</ul>
<h2>Features not yet supported</h2>
- Export/Import of the following alignment elements are not supported in BioJSON-1.0:
+ The following features are not supported in BioJSON-1.0:
<ul>
<ul>
- <li>Reference sequence</li>
- <li>Representative sequence</li>
- <li>Trees</li>
- <li>3D Structures</li>
+ <li>Export and import of Reference sequence</li>
+ <li>Export and import of Representative sequence</li>
+ <li>Export and import of Trees</li>
+ <li>Export and import of 3D Structures</li>
</ul>
</body>
</html>
</ul>
</body>
</html>