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JAL-1544 it's --> its
author
gmungoc
<g.m.carstairs@dundee.ac.uk>
Thu, 18 Sep 2014 08:29:57 +0000
(09:29 +0100)
committer
gmungoc
<g.m.carstairs@dundee.ac.uk>
Thu, 18 Sep 2014 08:29:57 +0000
(09:29 +0100)
help/html/calculations/consensus.html
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help/html/calculations/structureconsensus.html
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help/html/features/groovy.html
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diff --git
a/help/html/calculations/consensus.html
b/help/html/calculations/consensus.html
index
6df11da
..
bc42278
100644
(file)
--- a/
help/html/calculations/consensus.html
+++ b/
help/html/calculations/consensus.html
@@
-37,7
+37,7
@@
clipboard.
<p><strong>Sequence logo</strong></p>
By clicking on the label you can also activate the sequence logo. It
indicates the relative amount of residues per column which can be
<p><strong>Sequence logo</strong></p>
By clicking on the label you can also activate the sequence logo. It
indicates the relative amount of residues per column which can be
- estimated by it's size in the logo. The tooltip of a column gives the
+ estimated by its size in the logo. The tooltip of a column gives the
exact numbers for all occuring residues.
<br />If columns of the alignment are very diverse, then it can
sometimes be difficult to see the sequence logo - in this case, right
exact numbers for all occuring residues.
<br />If columns of the alignment are very diverse, then it can
sometimes be difficult to see the sequence logo - in this case, right
diff --git
a/help/html/calculations/structureconsensus.html
b/help/html/calculations/structureconsensus.html
index
097068d
..
6e797b1
100755
(executable)
--- a/
help/html/calculations/structureconsensus.html
+++ b/
help/html/calculations/structureconsensus.html
@@
-40,7
+40,7
@@
similar to a sequence logo but counts the numbers of base pairs. There
are two residues per column, the actual column and the interacting
base. The opening bracket is always the one on the left side.<br>
Like sequence logos the relative amount of a specific base pair can be
are two residues per column, the actual column and the interacting
base. The opening bracket is always the one on the left side.<br>
Like sequence logos the relative amount of a specific base pair can be
-estimated by it's size in the logo. The tool tip of a column gives the
+estimated by its size in the logo. The tool tip of a column gives the
exact numbers for all occurring valid base pairs.
</p>
</body>
exact numbers for all occurring valid base pairs.
</p>
</body>
diff --git
a/help/html/features/groovy.html
b/help/html/features/groovy.html
index
4185cc7
..
6559fd1
100644
(file)
--- a/
help/html/features/groovy.html
+++ b/
help/html/features/groovy.html
@@
-44,7
+44,7
@@
The jars are obtained from the <em>embedded</em> directory within the
<a href="http://dist.codehaus.org/groovy/distributions">groovy
distribution</a>. The easiest way of adding them to the Jalview classpath
The jars are obtained from the <em>embedded</em> directory within the
<a href="http://dist.codehaus.org/groovy/distributions">groovy
distribution</a>. The easiest way of adding them to the Jalview classpath
- is to download and build jalview from it's source distribution, and
+ is to download and build jalview from its source distribution, and
then add the groovy-all-*.jar to the lib directory whose path is given
in the java.ext.dirs property.
</p>
then add the groovy-all-*.jar to the lib directory whose path is given
in the java.ext.dirs property.
</p>
diff --git
a/help/html/webServices/dbreffetcher.html
b/help/html/webServices/dbreffetcher.html
index
382991b
..
ad42153
100644
(file)
--- a/
help/html/webServices/dbreffetcher.html
+++ b/
help/html/webServices/dbreffetcher.html
@@
-45,7
+45,7
@@
of ID queries from the ID string of each sequence in the alignment. It
then tries to query a subset of all the databases it can access in order to match
the alignment sequence to any records retrieved from the database. If a
match is found, then the sequence is annotated with that database's
then tries to query a subset of all the databases it can access in order to match
the alignment sequence to any records retrieved from the database. If a
match is found, then the sequence is annotated with that database's
-reference, and any cross-references that it's records contain.</p>
+reference, and any cross-references that its records contain.</p>
<p><strong>The Sequence Identification Process</strong><br>
The method of accession id discovery is derived from the method which
earlier Jalview versions used for Uniprot sequence feature retrieval,
<p><strong>The Sequence Identification Process</strong><br>
The method of accession id discovery is derived from the method which
earlier Jalview versions used for Uniprot sequence feature retrieval,