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Sequence checks for duplicate features
author
amwaterhouse
<Andrew Waterhouse>
Wed, 14 Jun 2006 10:16:23 +0000
(10:16 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Wed, 14 Jun 2006 10:16:23 +0000
(10:16 +0000)
src/jalview/io/DasSequenceFeatureFetcher.java
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diff --git
a/src/jalview/io/DasSequenceFeatureFetcher.java
b/src/jalview/io/DasSequenceFeatureFetcher.java
index
8f104c5
..
2fcb027
100755
(executable)
--- a/
src/jalview/io/DasSequenceFeatureFetcher.java
+++ b/
src/jalview/io/DasSequenceFeatureFetcher.java
@@
-37,7
+37,6
@@
import org.biojava.services.das.registry.DasSource;
import jalview.bin.Cache;
\r
\r
\r
import jalview.bin.Cache;
\r
\r
\r
-
\r
/**
\r
* DOCUMENT ME!
\r
*
\r
/**
\r
* DOCUMENT ME!
\r
*
\r
@@
-170,30
+169,17
@@
public class DasSequenceFeatureFetcher implements Runnable
Cache.log.debug("das source " + ds.getUrl() + " returned " +
\r
features.length + " features");
\r
\r
Cache.log.debug("das source " + ds.getUrl() + " returned " +
\r
features.length + " features");
\r
\r
-
\r
if (features.length > 0)
\r
{
\r
for (int i = 0; i < features.length; i++)
\r
{
\r
if (features.length > 0)
\r
{
\r
for (int i = 0; i < features.length; i++)
\r
{
\r
-
\r
SequenceFeature f = newSequenceFeature(features[i],
\r
source.getNickname());
\r
\r
SequenceFeature f = newSequenceFeature(features[i],
\r
source.getNickname());
\r
\r
- if (seq.sequenceFeatures != null)
\r
- {
\r
- for (int j = 0; (f != null) && j < seq.sequenceFeatures.length;
\r
- j++)
\r
- {
\r
- if (seq.sequenceFeatures[j].equals(f))
\r
- {
\r
- f = null;
\r
- }
\r
- }
\r
- }
\r
- if (f != null)
\r
- {
\r
+ System.out.println(source.getNickname()+" "+f.getType()+" "+
\r
+ f.begin+" "+f.end);
\r
+
\r
seq.addSequenceFeature(f);
\r
seq.addSequenceFeature(f);
\r
- }
\r
}
\r
}
\r
}
\r
}
\r
}
\r
}
\r
@@
-339,7
+325,6
@@
public class DasSequenceFeatureFetcher implements Runnable
return null;
\r
\r
}
\r
return null;
\r
\r
}
\r
-
\r
}
\r
\r
\r
}
\r
\r
\r