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clean up
author
tcofoegbu
<tcnofoegbu@dundee.ac.uk>
Mon, 15 Jun 2015 09:31:04 +0000
(10:31 +0100)
committer
tcofoegbu
<tcnofoegbu@dundee.ac.uk>
Mon, 15 Jun 2015 09:31:04 +0000
(10:31 +0100)
src/jalview/io/JSONFile.java
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diff --git
a/src/jalview/io/JSONFile.java
b/src/jalview/io/JSONFile.java
index
39d713d
..
ff129a4
100644
(file)
--- a/
src/jalview/io/JSONFile.java
+++ b/
src/jalview/io/JSONFile.java
@@
-38,7
+38,6
@@
import jalview.api.ComplexAlignFile;
import jalview.api.FeatureRenderer;
import jalview.api.FeaturesDisplayedI;
import jalview.datamodel.AlignmentAnnotation;
import jalview.api.FeatureRenderer;
import jalview.api.FeaturesDisplayedI;
import jalview.datamodel.AlignmentAnnotation;
-import jalview.datamodel.AlignmentI;
import jalview.datamodel.Annotation;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.HiddenSequences;
import jalview.datamodel.Annotation;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.HiddenSequences;
@@
-46,7
+45,6
@@
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
-import jalview.gui.AlignViewport;
import jalview.json.binding.v1.AlignmentAnnotationPojo;
import jalview.json.binding.v1.AlignmentPojo;
import jalview.json.binding.v1.AlignmentPojo.JalviewBioJsColorSchemeMapper;
import jalview.json.binding.v1.AlignmentAnnotationPojo;
import jalview.json.binding.v1.AlignmentPojo;
import jalview.json.binding.v1.AlignmentPojo.JalviewBioJsColorSchemeMapper;
@@
-592,14
+590,6
@@
public class JSONFile extends AlignFile implements ComplexAlignFile
return jalviewColor;
}
return jalviewColor;
}
- public AlignViewportI getViewport(AlignmentI al)
- {
- AlignViewportI viewport = new AlignViewport(al, getColumnSelection());
- viewport.setGlobalColourScheme(getColourScheme());
- viewport.setShowSequenceFeatures(isShowSeqFeatures());
- return viewport;
- }
-
public String getGlobalColorScheme()
{
return globalColorScheme;
public String getGlobalColorScheme()
{
return globalColorScheme;