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JAL-674 formatting
author
Jim Procter
<jprocter@dundee.ac.uk>
Thu, 27 Nov 2014 14:32:08 +0000
(14:32 +0000)
committer
Jim Procter
<jprocter@dundee.ac.uk>
Thu, 27 Nov 2014 14:32:08 +0000
(14:32 +0000)
src/MCview/PDBChain.java
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diff --git
a/src/MCview/PDBChain.java
b/src/MCview/PDBChain.java
index
408108b
..
8812dcc
100755
(executable)
--- a/
src/MCview/PDBChain.java
+++ b/
src/MCview/PDBChain.java
@@
-534,24
+534,24
@@
public class PDBChain
}
else
{
}
else
{
- if (sequence != null && sequence.getAnnotation() != null)
- {
- for (AlignmentAnnotation ana : sequence.getAnnotation())
+ if (sequence != null && sequence.getAnnotation() != null)
{
{
- List<AlignmentAnnotation> transfer = sq.getAlignmentAnnotations(
- ana.getCalcId(), ana.label);
- if (transfer == null || transfer.size() == 0)
- {
- ana.liftOver(dsq, sqmpping);
- // mapping.transfer(ana);
- }
- else
+ for (AlignmentAnnotation ana : sequence.getAnnotation())
{
{
- continue;
+ List<AlignmentAnnotation> transfer = sq
+ .getAlignmentAnnotations(ana.getCalcId(), ana.label);
+ if (transfer == null || transfer.size() == 0)
+ {
+ ana.liftOver(dsq, sqmpping);
+ // mapping.transfer(ana);
+ }
+ else
+ {
+ continue;
+ }
}
}
}
}
}
}
- }
if (false)
{
// Useful for debugging mappings - adds annotation for mapped position
if (false)
{
// Useful for debugging mappings - adds annotation for mapped position