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Takes a string, not sequence
author
amwaterhouse
<Andrew Waterhouse>
Tue, 18 Jul 2006 15:30:08 +0000
(15:30 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Tue, 18 Jul 2006 15:30:08 +0000
(15:30 +0000)
src/jalview/datamodel/BinarySequence.java
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diff --git
a/src/jalview/datamodel/BinarySequence.java
b/src/jalview/datamodel/BinarySequence.java
index
89d3971
..
7d03404
100755
(executable)
--- a/
src/jalview/datamodel/BinarySequence.java
+++ b/
src/jalview/datamodel/BinarySequence.java
@@
-38,22
+38,9
@@
public class BinarySequence extends Sequence
*
\r
* @param s DOCUMENT ME!
\r
*/
\r
*
\r
* @param s DOCUMENT ME!
\r
*/
\r
- public BinarySequence(SequenceI s)
\r
+ public BinarySequence(String s)
\r
{
\r
{
\r
- super(s.getName(), s.getSequence(), s.getStart(), s.getEnd());
\r
- }
\r
-
\r
- /**
\r
- * Creates a new BinarySequence object.
\r
- *
\r
- * @param name DOCUMENT ME!
\r
- * @param sequence DOCUMENT ME!
\r
- * @param start DOCUMENT ME!
\r
- * @param end DOCUMENT ME!
\r
- */
\r
- public BinarySequence(String name, String sequence, int start, int end)
\r
- {
\r
- super(name, sequence, start, end);
\r
+ super("", s, 0, s.length());
\r
}
\r
\r
/**
\r
}
\r
\r
/**
\r
@@
-168,13
+155,4
@@
public class BinarySequence extends Sequence
return dbinary;
\r
}
\r
\r
return dbinary;
\r
}
\r
\r
- /**
\r
- * DOCUMENT ME!
\r
- *
\r
- * @param rt DOCUMENT ME!
\r
- */
\r
- public static void printMemory(Runtime rt)
\r
- {
\r
- System.out.println("DEBUG: Free memory = " + rt.freeMemory()); // log.
\r
- }
\r
}
\r
}
\r