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uses shared singleton from jalview.gui.SequenceFetcher (consider revising so an insta...
author
jprocter
<Jim Procter>
Tue, 26 Aug 2008 10:09:55 +0000
(10:09 +0000)
committer
jprocter
<Jim Procter>
Tue, 26 Aug 2008 10:09:55 +0000
(10:09 +0000)
src/jalview/ws/DBRefFetcher.java
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diff --git
a/src/jalview/ws/DBRefFetcher.java
b/src/jalview/ws/DBRefFetcher.java
index
b007e13
..
82b411a
100644
(file)
--- a/
src/jalview/ws/DBRefFetcher.java
+++ b/
src/jalview/ws/DBRefFetcher.java
@@
-31,7
+31,9
@@
import jalview.ws.dbsources.Uniprot;
import jalview.ws.ebi.EBIFetchClient;
\r
\r
/**
\r
import jalview.ws.ebi.EBIFetchClient;
\r
\r
/**
\r
- * DOCUMENT ME!
\r
+ * Implements a runnable for validating a sequence
\r
+ * against external databases and then propagating
\r
+ * references and features onto the sequence(s)
\r
*
\r
* @author $author$
\r
* @version $Revision$
\r
*
\r
* @author $author$
\r
* @version $Revision$
\r
@@
-80,7
+82,8
@@
public class DBRefFetcher implements Runnable
ds[i] = seqs[i];
\r
}
\r
this.dataset = ds;
\r
ds[i] = seqs[i];
\r
}
\r
this.dataset = ds;
\r
- sfetcher = new SequenceFetcher();
\r
+ // TODO Jalview 2.5 lots of this code should be in the gui package!
\r
+ sfetcher = jalview.gui.SequenceFetcher.getSequenceFetcherSingleton(af);
\r
// select appropriate databases based on alignFrame context.
\r
if (af.getViewport().getAlignment().isNucleotide())
\r
{
\r
// select appropriate databases based on alignFrame context.
\r
if (af.getViewport().getAlignment().isNucleotide())
\r
{
\r