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JAL-654 JAL-1264 sequence associated annotation is duplicated before transfer to...
author
Jim Procter
<j.procter@dundee.ac.uk>
Mon, 6 Oct 2014 11:26:22 +0000
(12:26 +0100)
committer
Jim Procter
<j.procter@dundee.ac.uk>
Mon, 6 Oct 2014 11:26:22 +0000
(12:26 +0100)
src/jalview/datamodel/Sequence.java
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diff --git
a/src/jalview/datamodel/Sequence.java
b/src/jalview/datamodel/Sequence.java
index
9cc7d54
..
945a9d4
100755
(executable)
--- a/
src/jalview/datamodel/Sequence.java
+++ b/
src/jalview/datamodel/Sequence.java
@@
-1007,14
+1007,13
@@
public class Sequence implements SequenceI
datasetSequence.updatePDBIds();
if (annotation != null)
{
datasetSequence.updatePDBIds();
if (annotation != null)
{
- Vector<AlignmentAnnotation> _annot = annotation;
- annotation = null;
- for (AlignmentAnnotation aa : _annot)
+ for (AlignmentAnnotation aa : annotation)
{
{
- aa.sequenceRef = datasetSequence;
- aa.adjustForAlignment(); // uses annotation's own record of
+ AlignmentAnnotation _aa = new AlignmentAnnotation(aa);
+ _aa.sequenceRef = datasetSequence;
+ _aa.adjustForAlignment(); // uses annotation's own record of
// sequence-column mapping
// sequence-column mapping
- datasetSequence.addAlignmentAnnotation(aa);
+ datasetSequence.addAlignmentAnnotation(_aa);
}
}
}
}
}
}