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Maps are usually added to DbRefs which are added to dataset sequences.
author
jprocter
<Jim Procter>
Fri, 7 Sep 2007 16:56:32 +0000
(16:56 +0000)
committer
jprocter
<Jim Procter>
Fri, 7 Sep 2007 16:56:32 +0000
(16:56 +0000)
src/jalview/io/vamsas/Sequencemapping.java
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diff --git
a/src/jalview/io/vamsas/Sequencemapping.java
b/src/jalview/io/vamsas/Sequencemapping.java
index
867b498
..
a4ee585
100644
(file)
--- a/
src/jalview/io/vamsas/Sequencemapping.java
+++ b/
src/jalview/io/vamsas/Sequencemapping.java
@@
-53,7
+53,7
@@
public class Sequencemapping extends Rangetype
{
\r
jalview.bin.Cache.log.warn("Probable IMPLEMENTATION ERROR: "+from+" doesn't match the local mapping sequence.");
\r
}
\r
{
\r
jalview.bin.Cache.log.warn("Probable IMPLEMENTATION ERROR: "+from+" doesn't match the local mapping sequence.");
\r
}
\r
- if (ds!=null && sequenceMapping.getV_parent()!=ds)
\r
+ if (ds!=null && sequenceMapping.is__stored_in_document() && sequenceMapping.getV_parent()!=ds)
\r
{
\r
jalview.bin.Cache.log.warn("Probable IMPLEMENTATION ERROR: "+ds+" doesn't match the parent of the bound sequence mapping object.");
\r
}
\r
{
\r
jalview.bin.Cache.log.warn("Probable IMPLEMENTATION ERROR: "+ds+" doesn't match the parent of the bound sequence mapping object.");
\r
}
\r