typo fixes.

diff --git a/help/html/menus/wsmenu.html b/help/html/menus/wsmenu.html
index e2a9a4d..66f864c 100755 (executable)
--- a/help/html/menus/wsmenu.html
+++ b/help/html/menus/wsmenu.html
@@ -8,7 +8,7 @@
   on compute facilities at the University of Dundee. You need a continuous network \r
   connection in order to use these services through Jalview. </em> </p>\r
 <ul>\r
   on compute facilities at the University of Dundee. You need a continuous network \r
   connection in order to use these services through Jalview. </em> </p>\r
 <ul>\r

-  <li><strong>Alignment </strong> \r
+  <li><strong>Alignment</strong> \r

     <ul>\r
       <li><strong>ClustalW Multiple Sequence Alignment</strong><br>\r
         <em> Submits all, or just the currently selected sequences for alignment \r
     <ul>\r
       <li><strong>ClustalW Multiple Sequence Alignment</strong><br>\r
         <em> Submits all, or just the currently selected sequences for alignment \r

@@ -36,8 +36,8 @@
         detection and prediction. </em></li>\r
       <li><em>If a set of sequences are selected, and they appear to be aligned, \r
         then the alignment will be used for a Jnet prediction on the <strong>first</strong> \r
         detection and prediction. </em></li>\r
       <li><em>If a set of sequences are selected, and they appear to be aligned, \r
         then the alignment will be used for a Jnet prediction on the <strong>first</strong> \r

-        sequence selected in the set (that is, the one that was first clicked \r
-        on). </em> </li>\r
+        sequence in the set (that is, the one that appears first in\r
+        the alignment window). </em> </li>\r

     </ul>\r
   </li>\r
 </ul>\r
     </ul>\r
   </li>\r
 </ul>\r

diff --git a/help/html/webServices/index.html b/help/html/webServices/index.html
index d90fa85..22cb247 100755 (executable)
--- a/help/html/webServices/index.html
+++ b/help/html/webServices/index.html
@@ -31,7 +31,7 @@
                   diverse sets of sequences.\r
                   </li>\r
                   <li>JNet Secondary Structure Prediction<br>\r
                   diverse sets of sequences.\r
                   </li>\r
                   <li>JNet Secondary Structure Prediction<br>\r

-                  <em>This is a front end to the existing JNet www server.</em>\r
+                  This is a front end to the existing JNet www server.\r

                   </li>\r
                   </ul>\r
                   </p>\r
                   </li>\r
                   </ul>\r
                   </p>\r

diff --git a/help/html/webServices/jnet.html b/help/html/webServices/jnet.html
index 669110a..feefe77 100755 (executable)
--- a/help/html/webServices/jnet.html
+++ b/help/html/webServices/jnet.html
@@ -15,8 +15,9 @@ most likely prediction via a jury network. <br>
 sequence alignment profiles to improve protein secondary\r
 structure prediction <em>Proteins</em> <strong>40</strong> 502-511</li></ul>\r
 </p>\r
 sequence alignment profiles to improve protein secondary\r
 structure prediction <em>Proteins</em> <strong>40</strong> 502-511</li></ul>\r
 </p>\r

-The function available from the <strong>Web Service&#8594;JNet Secondary Structure \r
-Prediction&#8594; </strong> menu does two different kinds of prediction, \r
+The function available from the <strong>Web Service&#8594;Secondary\r
+Structure Prediction&#8594;JNet Secondary Structure \r
+Prediction</strong> menu does two different kinds of prediction, \r

 dependent upon the currently selected region:</p> \r
 <ul>\r
 <li>If nothing is selected, and the displayed sequences appear to\r
 dependent upon the currently selected region:</p> \r
 <ul>\r
 <li>If nothing is selected, and the displayed sequences appear to\r

diff --git a/help/html/webServices/muscle.html b/help/html/webServices/muscle.html
index 1ce576a..34da19c 100755 (executable)
--- a/help/html/webServices/muscle.html
+++ b/help/html/webServices/muscle.html
@@ -8,7 +8,7 @@ Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment with high
 accuracy and high throughput<br>\r
 <em>Nucleic Acids Research</em> <strong>32</strong>(5), 1792-97.</p>\r
 <p> This alignment method is applied to the selected region, if any, or the whole \r
 accuracy and high throughput<br>\r
 <em>Nucleic Acids Research</em> <strong>32</strong>(5), 1792-97.</p>\r
 <p> This alignment method is applied to the selected region, if any, or the whole \r

-  sequence set when the <strong>Web Service&#8594;Secondary Structure Prediction&#8594;Muscle \r
-  Alignment </strong>menu is selected. </p>\r
+  sequence set when the <strong>Web Service&#8594;Alignment&#8594;Muscle \r
+  Protein Sequence Alignment</strong>menu item is selected. </p>\r

 </body>\r
 </html>\r
 </body>\r
 </html>\r