inprogress

diff --git a/forester/ruby/evoruby/lib/evo/tool/hmmscan_summary.rb b/forester/ruby/evoruby/lib/evo/tool/hmmscan_summary.rb
index 1563a82..a443ca2 100644 (file)
--- a/forester/ruby/evoruby/lib/evo/tool/hmmscan_summary.rb
+++ b/forester/ruby/evoruby/lib/evo/tool/hmmscan_summary.rb
@@ -304,7 +304,8 @@ module Evoruby
                 fs_e_value_threshold,
                 hmm_for_protein_output,
                 i_e_value_threshold,
                 fs_e_value_threshold,
                 hmm_for_protein_output,
                 i_e_value_threshold,

-                true )
+                false,
+                species )

             end
             hmmscan_results_per_protein.clear
           end
             end
             hmmscan_results_per_protein.clear
           end

@@ -355,7 +356,8 @@ module Evoruby
         fs_e_value_threshold,
         hmm_for_protein_output,
         i_e_value_threshold,
         fs_e_value_threshold,
         hmm_for_protein_output,
         i_e_value_threshold,

-        uniprotkb )
+        uniprotkb,
+        species      )

 
       dc = 0
       # filter according to i-Evalue threshold
 
       dc = 0
       # filter according to i-Evalue threshold