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partly finished pods.
author
jprocter
<Jim Procter>
Mon, 24 Jul 2006 08:43:12 +0000
(08:43 +0000)
committer
jprocter
<Jim Procter>
Mon, 24 Jul 2006 08:43:12 +0000
(08:43 +0000)
utils/gff2annot.pl
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diff --git
a/utils/gff2annot.pl
b/utils/gff2annot.pl
index
0ff1d36
..
af4dfc5
100755
(executable)
--- a/
utils/gff2annot.pl
+++ b/
utils/gff2annot.pl
@@
-49,7
+49,10
@@
gff2annot.pl
=head2 SYNOPSIS
=head2 SYNOPSIS
-gff2annot.pl [one or more files containing gff annotation]
+
+ gff2annot.pl [one or more files containing gff annotation]
+
+Generates a nominally usable Jalview Annotation file on B<STDOUT> from arbitrary GFF annotation lines.
=head2 DESCRIPTION
=head2 DESCRIPTION
@@
-74,7
+77,7
@@
Passing some GFF annotation through STDIN:
Seq2 blasty significant_hsp 1 5 0.9 + 1 link http://mylink/
Seq2 blastz significant_hsp 1 5 0.9
Seq3 blastx significant_hsp 50 70
Seq2 blasty significant_hsp 1 5 0.9 + 1 link http://mylink/
Seq2 blastz significant_hsp 1 5 0.9
Seq3 blastx significant_hsp 50 70
- <Control^D>
+ <Control^D/Z>
Produces
Produces