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JAL-1473 tree calcs performed with ScoreModelI instances
author
Jim Procter
<jprocter@dundee.ac.uk>
Tue, 15 Apr 2014 17:11:07 +0000
(18:11 +0100)
committer
Jim Procter
<jprocter@dundee.ac.uk>
Mon, 21 Apr 2014 13:09:17 +0000
(14:09 +0100)
src/jalview/gui/AlignFrame.java
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diff --git
a/src/jalview/gui/AlignFrame.java
b/src/jalview/gui/AlignFrame.java
index
5160a3a
..
fd6fe24
100644
(file)
--- a/
src/jalview/gui/AlignFrame.java
+++ b/
src/jalview/gui/AlignFrame.java
@@
-27,6
+27,7
@@
import jalview.analysis.ParseProperties;
import jalview.analysis.SequenceIdMatcher;
import jalview.api.AlignViewControllerGuiI;
import jalview.api.AlignViewControllerI;
import jalview.analysis.SequenceIdMatcher;
import jalview.api.AlignViewControllerGuiI;
import jalview.api.AlignViewControllerI;
+import jalview.api.analysis.ScoreModelI;
import jalview.bin.Cache;
import jalview.commands.CommandI;
import jalview.commands.EditCommand;
import jalview.bin.Cache;
import jalview.commands.CommandI;
import jalview.commands.EditCommand;
@@
-3897,7
+3898,7
@@
public class AlignFrame extends GAlignFrame implements DropTargetListener,
for (final Object pwtype: ResidueProperties.scoreMatrices.keySet())
{
JMenuItem tm = new JMenuItem();
for (final Object pwtype: ResidueProperties.scoreMatrices.keySet())
{
JMenuItem tm = new JMenuItem();
- ScoreMatrix sm = (ScoreMatrix) ResidueProperties.scoreMatrices.get(pwtype);
+ ScoreModelI sm = ResidueProperties.scoreMatrices.get(pwtype);
final String title="Calculate "+type+" using "+sm.getName();
tm.setText(title);// MessageManager.getString("label.neighbour_blosum62"));
tm
final String title="Calculate "+type+" using "+sm.getName();
tm.setText(title);// MessageManager.getString("label.neighbour_blosum62"));
tm