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rendergaps(boolean) function added
author
amwaterhouse
<Andrew Waterhouse>
Wed, 1 Dec 2004 17:11:29 +0000
(17:11 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Wed, 1 Dec 2004 17:11:29 +0000
(17:11 +0000)
src/jalview/gui/AlignViewport.java
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diff --git
a/src/jalview/gui/AlignViewport.java
b/src/jalview/gui/AlignViewport.java
index
1324c1e
..
03e0c5a
100755
(executable)
--- a/
src/jalview/gui/AlignViewport.java
+++ b/
src/jalview/gui/AlignViewport.java
@@
-14,11
+14,12
@@
public class AlignViewport
int startSeq;
\r
int endSeq;
\r
\r
int startSeq;
\r
int endSeq;
\r
\r
- boolean showScores;
\r
- boolean showText;
\r
- boolean showColourText;
\r
- boolean showBoxes;
\r
- boolean wrapAlignment;
\r
+ boolean showScores=false;
\r
+ boolean showText=true;
\r
+ boolean showColourText=false;
\r
+ boolean showBoxes=true;
\r
+ boolean wrapAlignment=false;
\r
+ boolean renderGaps = false;
\r
\r
boolean groupEdit = false;
\r
\r
\r
boolean groupEdit = false;
\r
\r
@@
-105,7
+106,6
@@
public class AlignViewport
}
\r
\r
Vector consensus = new Vector();
\r
}
\r
\r
Vector consensus = new Vector();
\r
-
\r
public Vector getConsensus(boolean recalculate)
\r
{
\r
if(recalculate || consensus.size()<1)
\r
public Vector getConsensus(boolean recalculate)
\r
{
\r
if(recalculate || consensus.size()<1)
\r
@@
-220,6
+220,16
@@
public class AlignViewport
showText = state;
\r
}
\r
\r
showText = state;
\r
}
\r
\r
+ public void setRenderGaps(boolean state){
\r
+ renderGaps = state;
\r
+ if(renderer instanceof SequenceRenderer)
\r
+ {
\r
+ SequenceRenderer sr = (SequenceRenderer)renderer;
\r
+ sr.renderGaps(state);
\r
+ }
\r
+ }
\r
+
\r
+
\r
public boolean getColourText()
\r
{
\r
return showColourText;
\r
public boolean getColourText()
\r
{
\r
return showColourText;
\r
@@
-254,10
+264,10
@@
public class AlignViewport
public void setGroupEdit(boolean state) {
\r
groupEdit = state;
\r
}
\r
public void setGroupEdit(boolean state) {
\r
groupEdit = state;
\r
}
\r
- public String getGapCharacter() {
\r
+ public char getGapCharacter() {
\r
return getAlignment().getGapCharacter();
\r
}
\r
return getAlignment().getGapCharacter();
\r
}
\r
- public void setGapCharacter(String gap) {
\r
+ public void setGapCharacter(char gap) {
\r
if (getAlignment() != null) {
\r
getAlignment().setGapCharacter(gap);
\r
}
\r
if (getAlignment() != null) {
\r
getAlignment().setGapCharacter(gap);
\r
}
\r