- new MCview.AppletPDBViewer(param, protocol,\r
- (Sequence) currentAlignFrame.\r
- getAlignViewport().getAlignment().\r
- findName(sequence),\r
- currentAlignFrame.getSeqcanvas());\r
+ if (jmolAvailable)\r
+ new jalview.appletgui.AppletJmol(pdb,\r
+ new SequenceI[]\r
+ { (Sequence) currentAlignFrame.\r
+ getAlignViewport().getAlignment().\r
+ findName(sequence)},\r
+ currentAlignFrame.alignPanel,\r
+ protocol);\r
+ else\r
+\r
+ new MCview.AppletPDBViewer(pdb,\r
+ new SequenceI[]\r
+ { (Sequence) currentAlignFrame.\r
+ getAlignViewport().getAlignment().\r
+ findName(sequence)},\r
+ currentAlignFrame.alignPanel,\r
+ protocol);\r