git://source.jalview.org
/
jalview.git
/ commitdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
| commitdiff |
tree
raw
|
patch
|
inline
| side by side (parent:
2469698
)
PDB is now PDBEntry
author
amwaterhouse
<Andrew Waterhouse>
Thu, 10 Nov 2005 11:01:51 +0000
(11:01 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Thu, 10 Nov 2005 11:01:51 +0000
(11:01 +0000)
src/jalview/analysis/SeqsetUtils.java
patch
|
blob
|
history
diff --git
a/src/jalview/analysis/SeqsetUtils.java
b/src/jalview/analysis/SeqsetUtils.java
index
06a8192
..
564e3f1
100755
(executable)
--- a/
src/jalview/analysis/SeqsetUtils.java
+++ b/
src/jalview/analysis/SeqsetUtils.java
@@
-51,7
+51,7
@@
public class SeqsetUtils
sqinfo.put("End", new Integer(seq.getEnd()));
\r
sqinfo.put("SeqFeatures", (seq.getSequenceFeatures() !=null) ? seq.getSequenceFeatures() : new Vector());
\r
sqinfo.put("PdbId",
\r
sqinfo.put("End", new Integer(seq.getEnd()));
\r
sqinfo.put("SeqFeatures", (seq.getSequenceFeatures() !=null) ? seq.getSequenceFeatures() : new Vector());
\r
sqinfo.put("PdbId",
\r
- (seq.getPDBId() != null) ? seq.getPDBId() : new String(""));
\r
+ (seq.getPDBId() != null) ? seq.getPDBId() : new Vector());
\r
sqinfo.put("datasetSequence", (seq.getDatasetSequence() !=null) ? seq.getDatasetSequence() : new Sequence("THISISAPLACEHOLDER",""));
\r
return sqinfo;
\r
}
\r
sqinfo.put("datasetSequence", (seq.getDatasetSequence() !=null) ? seq.getDatasetSequence() : new Sequence("THISISAPLACEHOLDER",""));
\r
return sqinfo;
\r
}
\r
@@
-71,7
+71,7
@@
public class SeqsetUtils
Integer end = (Integer) sqinfo.get("End");
\r
java.util.Vector sfeatures = (java.util.Vector) sqinfo.get(
\r
"SeqFeatures");
\r
Integer end = (Integer) sqinfo.get("End");
\r
java.util.Vector sfeatures = (java.util.Vector) sqinfo.get(
\r
"SeqFeatures");
\r
- String pdbid = (String) sqinfo.get("PdbId");
\r
+ Vector pdbid = (Vector) sqinfo.get("PdbId");
\r
Sequence seqds = (Sequence) sqinfo.get("datasetSequence");
\r
if (oldname == null)
\r
{
\r
Sequence seqds = (Sequence) sqinfo.get("datasetSequence");
\r
if (oldname == null)
\r
{
\r