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JAL-2106 JAL-1926 updated source doc for set/getSourceDBRef
author
tcofoegbu
<tcnofoegbu@dundee.ac.uk>
Tue, 17 May 2016 11:31:25 +0000
(12:31 +0100)
committer
tcofoegbu
<tcnofoegbu@dundee.ac.uk>
Tue, 17 May 2016 11:31:25 +0000
(12:31 +0100)
src/jalview/datamodel/SequenceI.java
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diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
60040d8
..
69eb1d4
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-435,7
+435,21
@@
public interface SequenceI extends ASequenceI
*/
public PDBEntry getPDBEntry(String pdbId);
*/
public PDBEntry getPDBEntry(String pdbId);
+ /**
+ * Set the distinct source database, and accession number from which a
+ * sequence and its start-end data were derived from. This is very important
+ * for SIFTS mappings and must be set prior to performing SIFTS mapping.
+ *
+ * @param dbRef
+ * the source dbRef for the sequence
+ */
public void setSourceDBRef(DBRefEntryI dbRef);
public void setSourceDBRef(DBRefEntryI dbRef);
+ /**
+ * Get the distinct source database, and accession number from which a
+ * sequence and its start-end data were derived from.
+ *
+ * @return
+ */
public DBRefEntryI getSourceDBRef();
}
public DBRefEntryI getSourceDBRef();
}