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bug fix for 0013013
author
jprocter
<Jim Procter>
Mon, 13 Mar 2006 16:46:36 +0000
(16:46 +0000)
committer
jprocter
<Jim Procter>
Mon, 13 Mar 2006 16:46:36 +0000
(16:46 +0000)
src/jalview/gui/SequenceFetcher.java
patch
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diff --git
a/src/jalview/gui/SequenceFetcher.java
b/src/jalview/gui/SequenceFetcher.java
index
2e2456b
..
67a3eff
100755
(executable)
--- a/
src/jalview/gui/SequenceFetcher.java
+++ b/
src/jalview/gui/SequenceFetcher.java
@@
-249,7
+249,7
@@
public class SequenceFetcher
while (en.hasMoreElements())
\r
{
\r
UniprotEntry entry = (UniprotEntry) en.nextElement();
\r
while (en.hasMoreElements())
\r
{
\r
UniprotEntry entry = (UniprotEntry) en.nextElement();
\r
- StringBuffer name = new StringBuffer(">Uniprot/Swiss-Prot");
\r
+ StringBuffer name = new StringBuffer(">UniProt/Swiss-Prot");
\r
Enumeration en2 = entry.getAccession().elements();
\r
while (en2.hasMoreElements())
\r
{
\r
Enumeration en2 = entry.getAccession().elements();
\r
while (en2.hasMoreElements())
\r
{
\r
@@
-288,10
+288,14
@@
public class SequenceFetcher
}
\r
\r
sequence[i].getDatasetSequence().setPDBId(onlyPdbEntries);
\r
}
\r
\r
sequence[i].getDatasetSequence().setPDBId(onlyPdbEntries);
\r
- e = entry.getFeature().elements();
\r
- while(e.hasMoreElements())
\r
+ if (entry.getFeature() != null)
\r
{
\r
{
\r
- sequence[i].getDatasetSequence().addSequenceFeature((SequenceFeature)e.nextElement());
\r
+ e = entry.getFeature().elements();
\r
+ while (e.hasMoreElements())
\r
+ {
\r
+ sequence[i].getDatasetSequence().addSequenceFeature( (
\r
+ SequenceFeature) e.nextElement());
\r
+ }
\r
}
\r
}
\r
}
\r
}
\r
}
\r
}
\r