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todo
author
jprocter
<Jim Procter>
Tue, 31 Mar 2009 16:39:14 +0000
(16:39 +0000)
committer
jprocter
<Jim Procter>
Tue, 31 Mar 2009 16:39:14 +0000
(16:39 +0000)
src/jalview/io/FeaturesFile.java
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diff --git
a/src/jalview/io/FeaturesFile.java
b/src/jalview/io/FeaturesFile.java
index
ef70efa
..
3bbbc9a
100755
(executable)
--- a/
src/jalview/io/FeaturesFile.java
+++ b/
src/jalview/io/FeaturesFile.java
@@
-137,6
+137,7
@@
public class FeaturesFile extends AlignFile
}
\r
else
\r
{
\r
}
\r
else
\r
{
\r
+ // TODO: graduated feature colour needs to be parsed here
\r
UserColourScheme ucs = new UserColourScheme(st.nextToken());
\r
colours.put(type, ucs.findColour('A'));
\r
if (st.hasMoreElements())
\r
UserColourScheme ucs = new UserColourScheme(st.nextToken());
\r
colours.put(type, ucs.findColour('A'));
\r
if (st.hasMoreElements())
\r
@@
-454,6
+455,8
@@
public class FeaturesFile extends AlignFile
while (en.hasMoreElements())
\r
{
\r
type = en.nextElement().toString();
\r
while (en.hasMoreElements())
\r
{
\r
type = en.nextElement().toString();
\r
+ // TODO: Extend to output graduated feature colour details
\r
+
\r
color = Integer.parseInt(visible.get(type).toString());
\r
out.append(type
\r
+ "\t"
\r
color = Integer.parseInt(visible.get(type).toString());
\r
out.append(type
\r
+ "\t"
\r