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JAL-674 disable addition of PDBRESNUM annotation line
author
Jim Procter
<jprocter@dundee.ac.uk>
Wed, 26 Nov 2014 14:40:16 +0000
(14:40 +0000)
committer
Jim Procter
<jprocter@dundee.ac.uk>
Wed, 26 Nov 2014 14:40:22 +0000
(14:40 +0000)
src/MCview/PDBChain.java
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diff --git
a/src/MCview/PDBChain.java
b/src/MCview/PDBChain.java
index
0949e7f
..
408108b
100755
(executable)
--- a/
src/MCview/PDBChain.java
+++ b/
src/MCview/PDBChain.java
@@
-552,34
+552,37
@@
public class PDBChain
}
}
}
}
}
}
- float min = -1, max = 0;
- Annotation[] an = new Annotation[sq.getEnd() - sq.getStart() + 1];
- for (int i = sq.getStart(), j = sq.getEnd(), k = 0; i <= j; i++, k++)
+ if (false)
{
{
- int prn = mapping.getPDBResNum(k + 1);
-
- an[k] = new Annotation(prn);
- if (min == -1)
+ // Useful for debugging mappings - adds annotation for mapped position
+ float min = -1, max = 0;
+ Annotation[] an = new Annotation[sq.getEnd() - sq.getStart() + 1];
+ for (int i = sq.getStart(), j = sq.getEnd(), k = 0; i <= j; i++, k++)
{
{
- min = k;
- max = k;
- }
- else
- {
- if (min > k)
+ int prn = mapping.getPDBResNum(k + 1);
+
+ an[k] = new Annotation(prn);
+ if (min == -1)
{
min = k;
{
min = k;
+ max = k;
}
}
- else if (max < k)
+ else
{
{
- max = k;
+ if (min > k)
+ {
+ min = k;
+ }
+ else if (max < k)
+ {
+ max = k;
+ }
}
}
}
}
+ sq.addAlignmentAnnotation(new AlignmentAnnotation("PDB.RESNUM",
+ "PDB Residue Numbering for " + this.pdbid + ":" + this.id,
+ an, min, max, AlignmentAnnotation.LINE_GRAPH));
}
}
- sq.addAlignmentAnnotation(new AlignmentAnnotation("PDB.RESNUM",
- "PDB Residue Numbering for " + this.pdbid + ":" + this.id,
- an, min, max, AlignmentAnnotation.LINE_GRAPH));
-
}
}
}
}
}
}