g.setFont(av.getFont());\r
double charWidth = av.getCharWidth();\r
int charHeight = av.getCharHeight();\r
g.setFont(av.getFont());\r
double charWidth = av.getCharWidth();\r
int charHeight = av.getCharHeight();\r
- for (int i = 0; i < av.getAlignment().getHeight(); i++) {\r
- if (!av.getSelection().contains(av.getAlignment().getSequenceAt(i))) {\r
+ for (int i = 0; i < av.getAlignment().getHeight(); i++)\r
+ if (!av.getSelection().contains(av.getAlignment().getSequenceAt(i)))\r
pid = AAFrequency.calculatePID(av.getAlignment().getSequenceAt(0),\r
av.getAlignment().getSequences(),\r
av.getPIDWindow(),x1,x2);\r
\r
pid = AAFrequency.calculatePID(av.getAlignment().getSequenceAt(0),\r
av.getAlignment().getSequences(),\r
av.getPIDWindow(),x1,x2);\r
\r
} else if (av.getAlignment().getSequenceAt(i).getName().equals("CpG")) {\r
r = cgr;\r
System.out.println("cg renderer");\r
} else if (av.getAlignment().getSequenceAt(i).getName().equals("CpG")) {\r
r = cgr;\r
System.out.println("cg renderer");\r
\r
r.drawSequence(g,cs,av.getAlignment().getSequenceAt(i),\r
x1,\r
\r
r.drawSequence(g,cs,av.getAlignment().getSequenceAt(i),\r
x1,\r