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f38bc38
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generalised feature attribute parsing slightly (no embl specs to work from yet)
author
jprocter
<Jim Procter>
Fri, 23 Mar 2007 16:36:02 +0000
(16:36 +0000)
committer
jprocter
<Jim Procter>
Fri, 23 Mar 2007 16:36:02 +0000
(16:36 +0000)
src/jalview/datamodel/xdb/embl/EmblEntry.java
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diff --git
a/src/jalview/datamodel/xdb/embl/EmblEntry.java
b/src/jalview/datamodel/xdb/embl/EmblEntry.java
index
ffe138b
..
22437e7
100644
(file)
--- a/
src/jalview/datamodel/xdb/embl/EmblEntry.java
+++ b/
src/jalview/datamodel/xdb/embl/EmblEntry.java
@@
-213,7
+213,7
@@
public class EmblEntry {
}
\r
}
\r
String prseq=null;
\r
}
\r
}
\r
String prseq=null;
\r
- String prname=null;
\r
+ String prname=new String();
\r
String prid=null;
\r
int prstart=1;
\r
// get qualifiers
\r
String prid=null;
\r
int prstart=1;
\r
// get qualifiers
\r
@@
-234,10
+234,14
@@
public class EmblEntry {
{
\r
prstart = Integer.parseInt(q.getValue());
\r
}
\r
{
\r
prstart = Integer.parseInt(q.getValue());
\r
}
\r
- else
\r
- if (q.getName().equals("product")) {
\r
+ else {
\r
+ // throw anything else into the title
\r
+ if (prname.length()==0) {
\r
prname = q.getValue();
\r
prname = q.getValue();
\r
+ } else {
\r
+ prname = prname + q.getName()+":"+q.getValue();
\r
}
\r
}
\r
+ }
\r
}
\r
}
\r
Sequence product=null;
\r
}
\r
}
\r
Sequence product=null;
\r