\r
AlignViewport av;\r
\r
- boolean showScores = false;\r
boolean displaySearch = false;\r
int[] searchResults = null;\r
\r
}\r
if (value != -1)\r
{\r
- int x = LABEL_WEST - fm.stringWidth(value + "");\r
+ int x = LABEL_WEST - fm.stringWidth(String.valueOf(value))-av.charWidth/2;\r
g.drawString(value + "", x,\r
ypos + i * av.charHeight - av.charHeight / 5);\r
}\r
}\r
if (value != -1)\r
{\r
- g.drawString(value + "", 0,\r
+ g.drawString(value + "", av.charWidth/2,\r
ypos + i * av.charHeight - av.charHeight / 5);\r
}\r
}\r
int LABEL_WEST, LABEL_EAST;\r
public int getWrappedCanvasWidth(int cwidth)\r
{\r
- FontMetrics fm = getFontMetrics(av.getFont());\r
+ FontMetrics fm = getFontMetrics(av.getFont());\r
\r
- LABEL_EAST = 0;\r
- LABEL_WEST = 0;\r
+ LABEL_EAST = 0;\r
+ LABEL_WEST = 0;\r
\r
- if (av.scaleRightWrapped)\r
- {\r
- LABEL_EAST = fm.stringWidth(av.alignment.getWidth() + "000");\r
- }\r
+ if (av.scaleRightWrapped)\r
+ {\r
+ LABEL_EAST = fm.stringWidth(getMask()+"0");\r
+ }\r
\r
- if (av.scaleLeftWrapped)\r
- {\r
- LABEL_WEST = fm.stringWidth(av.alignment.getWidth() + "");\r
- }\r
+ if (av.scaleLeftWrapped)\r
+ {\r
+ LABEL_WEST = fm.stringWidth(getMask());\r
+ }\r
\r
- return (cwidth - LABEL_EAST - LABEL_WEST) / av.charWidth;\r
+ return (cwidth - LABEL_EAST - LABEL_WEST) / av.charWidth;\r
}\r
\r
+\r
+ /**\r
+ * Generates a string of zeroes.\r
+ * @return String\r
+ */\r
+ String getMask()\r
+ {\r
+ String mask = "0";\r
+ for (int i = av.alignment.getWidth(); i > 0; i /= 10)\r
+ {\r
+ mask += "0";\r
+ }\r
+ return mask;\r
+ }\r
+\r
public void drawWrappedPanel(Graphics g, int canvasWidth, int canvasHeight,\r
int startRes)\r
{\r
\r
FontMetrics fm = getFontMetrics(av.getFont());\r
\r
- int LABEL_EAST = 0;\r
if (av.scaleRightWrapped)\r
{\r
- LABEL_EAST = fm.stringWidth(al.getWidth() + "000");\r
+ LABEL_EAST = fm.stringWidth(getMask()+"0");\r
}\r
+\r
int LABEL_WEST = 0;\r
+\r
if (av.scaleLeftWrapped)\r
{\r
- LABEL_WEST = fm.stringWidth(al.getWidth() + "0");\r
+ LABEL_WEST = fm.stringWidth(getMask());\r
}\r
\r
int cWidth = (canvasWidth - LABEL_EAST - LABEL_WEST) / av.charWidth;\r
\r
if (av.scaleRightWrapped)\r
{\r
- g.translate(canvasWidth - LABEL_EAST + av.charWidth, 0);\r
+ g.translate(canvasWidth - LABEL_EAST, 0);\r
drawEastScale(g, startRes, endx, ypos);\r
- g.translate( - (canvasWidth - LABEL_EAST + av.charWidth), 0);\r
+ g.translate( - (canvasWidth - LABEL_EAST), 0);\r
}\r
\r
g.translate(LABEL_WEST, 0);\r
{\r
public void mouseMoved(MouseEvent evt)\r
{\r
- if (av.getWrapAlignment())\r
- {\r
- return;\r
- }\r
doMouseMoved(evt);\r
}\r
\r
public void mouseDragged(MouseEvent evt)\r
{\r
- if (av.getWrapAlignment())\r
- {\r
- return;\r
- }\r
if (editingSeqs)\r
{\r
doMouseDragged(evt);\r
{\r
public void mouseReleased(MouseEvent evt)\r
{\r
- if (av.getWrapAlignment())\r
- {\r
- return;\r
- }\r
if (editingSeqs)\r
{\r
doMouseReleased(evt);\r
\r
public void mousePressed(MouseEvent evt)\r
{\r
- if (av.getWrapAlignment())\r
- {\r
- return;\r
- }\r
if (evt.isShiftDown() || evt.isAltDown() || evt.isControlDown())\r
{\r
if (evt.isAltDown() || evt.isControlDown())\r
\r
public void mouseExited(MouseEvent evt)\r
{\r
- if (av.getWrapAlignment() || editingSeqs)\r
+ if (editingSeqs)\r
{\r
return;\r
}\r
\r
public void mouseEntered(MouseEvent evt)\r
{\r
- if (av.getWrapAlignment() || editingSeqs)\r
+ if (editingSeqs)\r
{\r
return;\r
}\r
ap.repaint();\r
}\r
\r
+ int findRes(MouseEvent evt)\r
+ {\r
+ int res = 0;\r
+ int x = evt.getX();\r
+\r
+ if (av.wrapAlignment)\r
+ {\r
+ int y = evt.getY();\r
+ y -= (2 * av.charHeight);\r
+ x -= seqCanvas.LABEL_WEST;\r
+\r
+ int chunkHeight = (av.getAlignment().getHeight() + 2) * av.charHeight;\r
+ int cwidth = seqCanvas.getWrappedCanvasWidth(this.getSize().width);\r
+ int block = y/chunkHeight;\r
+ block += av.getStartRes()/cwidth;\r
+\r
+ res = block*cwidth + x / av.getCharWidth();\r
+ }\r
+ else\r
+ {\r
+ res = (x / av.getCharWidth()) + av.getStartRes();\r
+ }\r
+\r
+ return res;\r
+\r
+ }\r
+\r
+ int findSeq(MouseEvent evt)\r
+ {\r
+ int seq = 0;\r
+ int y = evt.getY();\r
+\r
+ if (av.wrapAlignment)\r
+ {\r
+ y -= (2 * av.charHeight);\r
+ int chunkHeight = (av.getAlignment().getHeight() + 2) * av.charHeight;\r
+ seq = ( (y % chunkHeight) / av.getCharHeight());\r
+ }\r
+ else\r
+ {\r
+ seq = (y / av.getCharHeight()) + av.getStartSeq();\r
+ }\r
+\r
+ return seq;\r
+ }\r
+\r
+\r
public void doMousePressed(MouseEvent evt)\r
{\r
ap.alignFrame.addHistoryItem(new HistoryItem(\r
"Edit Sequence", av.alignment, HistoryItem.EDIT));\r
- int seq;\r
- int res;\r
-\r
- int x = evt.getX();\r
- int y = evt.getY();\r
\r
- res = x / av.getCharWidth() + av.getStartRes();\r
- seq = y / av.getCharHeight() + av.getStartSeq();\r
+ int seq = findSeq(evt);\r
+ int res = findRes(evt);\r
\r
if (seq < av.getAlignment().getHeight() &&\r
res < av.getAlignment().getSequenceAt(seq).getLength())\r
\r
public void doMouseMoved(MouseEvent evt)\r
{\r
- int res = 0, seq = 0;\r
- int x = evt.getX();\r
- int y = evt.getY();\r
- if (av.wrapAlignment)\r
- {\r
- y -= 2 * av.charHeight;\r
- int chunkHeight = (av.getAlignment().getHeight() + 2) * av.charHeight;\r
-\r
- res = (int) ( (y / chunkHeight) * (getSize().width / av.charWidth)) +\r
- x / av.getCharWidth() + av.getStartRes();\r
-\r
- y %= chunkHeight;\r
- seq = y / av.getCharHeight() + av.getStartSeq();\r
-\r
- }\r
- else\r
- {\r
- res = x / av.getCharWidth() + av.getStartRes();\r
- seq = y / av.getCharHeight() + av.getStartSeq();\r
- }\r
+ int res = findRes(evt);\r
+ int seq = findSeq(evt);\r
\r
if (seq >= av.getAlignment().getHeight())\r
{\r
{\r
\r
// If we're dragging we're editing\r
- int res = evt.getX() / av.getCharWidth() + av.getStartRes();\r
+ int res = findRes(evt);\r
if (res < 0)\r
{\r
res = 0;\r
int oldSeq = -1;\r
public void doMousePressedDefineMode(MouseEvent evt)\r
{\r
- int res = evt.getX() / av.getCharWidth() + av.getStartRes();\r
- int seq = evt.getY() / av.getCharHeight() + av.getStartSeq();\r
+ int res = findRes(evt);\r
+ int seq = findSeq(evt);\r
oldSeq = seq;\r
\r
SequenceI sequence = (Sequence) av.getAlignment().getSequenceAt(seq);\r
boolean remove = false;\r
public void doMouseDraggedDefineMode(MouseEvent evt)\r
{\r
- int res = evt.getX() / av.getCharWidth() + av.getStartRes();\r
- int y = evt.getY() / av.getCharHeight() + av.getStartSeq();\r
+ int res = findRes(evt);\r
+ int y = findSeq(evt);\r
\r
if (stretchGroup == null)\r
{\r
{\r
res = av.getStartRes();\r
}\r
- else if (res > av.getEndRes())\r
+ else if (res > av.getEndRes() && !av.getWrapAlignment())\r
{\r
res = av.getEndRes();\r
}\r
\r
public void doMouseExitedDefineMode(MouseEvent e)\r
{\r
- if (av.getWrapAlignment())\r
- {\r
- return;\r
- }\r
-\r
if (mouseDragging)\r
{\r
scrollThread = new ScrollThread();\r