= Gene tree Preprocessing =
== Usage ==
-`java -Xmx1024m -cp
-path/to/forester.jar org.forester.application.gene_tree_preprocess <input tree in NH, NHX, Nexus, or phyloXML>`
+{{{java -Xmx1024m -cp
+path/to/forester.jar org.forester.application.gene_tree_preprocess <input tree in NH, NHX, Nexus, or phyloXML>}}}
== Details ==
Output is two files:
- * <input>_preprocessed_gene_tree.phylo.xml
- * <input>_removed_nodes.txt
\ No newline at end of file
+ * input-name_preprocessed_gene_tree.phylo.xml
+ * input-name_removed_nodes.txt
\ No newline at end of file