2.6.1 update

author jprocter <Jim Procter>

Mon, 15 Nov 2010 11:00:40 +0000 (11:00 +0000)

committer jprocter <Jim Procter>

Mon, 15 Nov 2010 11:00:40 +0000 (11:00 +0000)
author jprocter <Jim Procter>
Mon, 15 Nov 2010 11:00:40 +0000 (11:00 +0000)
committer jprocter <Jim Procter>
Mon, 15 Nov 2010 11:00:40 +0000 (11:00 +0000)
diff --git a/help/helpTOC.xml b/help/helpTOC.xml

index d416dfa..3e41ba3 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="ISO-8859-1"  ?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/consensus.html b/help/html/calculations/consensus.html

index 9af3f7d..6a22aef 100644 (file)
--- a/help/html/calculations/consensus.html
+++ b/help/html/calculations/consensus.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/conservation.html b/help/html/calculations/conservation.html

index bfae345..ab2310f 100755 (executable)
--- a/help/html/calculations/conservation.html
+++ b/help/html/calculations/conservation.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/pairwise.html b/help/html/calculations/pairwise.html

index 26a47b6..627dccf 100755 (executable)
--- a/help/html/calculations/pairwise.html
+++ b/help/html/calculations/pairwise.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/pca.html b/help/html/calculations/pca.html

index ce188bd..9ec1fe8 100755 (executable)
--- a/help/html/calculations/pca.html
+++ b/help/html/calculations/pca.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/quality.html b/help/html/calculations/quality.html

index 03c5b39..3350733 100755 (executable)
--- a/help/html/calculations/quality.html
+++ b/help/html/calculations/quality.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/recoverInputdata.html b/help/html/calculations/recoverInputdata.html

index 1d36e29..6781e77 100644 (file)
--- a/help/html/calculations/recoverInputdata.html
+++ b/help/html/calculations/recoverInputdata.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html

index 7effbe5..4b8fe7b 100755 (executable)
--- a/help/html/calculations/redundancy.html
+++ b/help/html/calculations/redundancy.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/sorting.html b/help/html/calculations/sorting.html

index 13c3ff9..29aaa12 100755 (executable)
--- a/help/html/calculations/sorting.html
+++ b/help/html/calculations/sorting.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/tree.html b/help/html/calculations/tree.html

index 0e9ba3e..26a24c7 100755 (executable)
--- a/help/html/calculations/tree.html
+++ b/help/html/calculations/tree.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/treeviewer.html b/help/html/calculations/treeviewer.html

index 67a92c4..32db2ce 100755 (executable)
--- a/help/html/calculations/treeviewer.html
+++ b/help/html/calculations/treeviewer.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/abovePID.html b/help/html/colourSchemes/abovePID.html

index fb4e878..75ae927 100755 (executable)
--- a/help/html/colourSchemes/abovePID.html
+++ b/help/html/colourSchemes/abovePID.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/annotationColouring.html b/help/html/colourSchemes/annotationColouring.html

index 360ec41..3db00dd 100755 (executable)
--- a/help/html/colourSchemes/annotationColouring.html
+++ b/help/html/colourSchemes/annotationColouring.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/blosum.html b/help/html/colourSchemes/blosum.html

index ec38cd8..5f4231e 100755 (executable)
--- a/help/html/colourSchemes/blosum.html
+++ b/help/html/colourSchemes/blosum.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/buried.html b/help/html/colourSchemes/buried.html

index 176b7fe..2a91baf 100755 (executable)
--- a/help/html/colourSchemes/buried.html
+++ b/help/html/colourSchemes/buried.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/clustal.html b/help/html/colourSchemes/clustal.html

index ecca772..0e57626 100755 (executable)
--- a/help/html/colourSchemes/clustal.html
+++ b/help/html/colourSchemes/clustal.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/conservation.html b/help/html/colourSchemes/conservation.html

index 95d9f83..1affe45 100755 (executable)
--- a/help/html/colourSchemes/conservation.html
+++ b/help/html/colourSchemes/conservation.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/helix.html b/help/html/colourSchemes/helix.html

index 111eac4..9013253 100755 (executable)
--- a/help/html/colourSchemes/helix.html
+++ b/help/html/colourSchemes/helix.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/hydrophobic.html b/help/html/colourSchemes/hydrophobic.html

index 619bc4b..75ccc6f 100755 (executable)
--- a/help/html/colourSchemes/hydrophobic.html
+++ b/help/html/colourSchemes/hydrophobic.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/index.html b/help/html/colourSchemes/index.html

index 7aecc23..79a6012 100755 (executable)
--- a/help/html/colourSchemes/index.html
+++ b/help/html/colourSchemes/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/nucleotide.html b/help/html/colourSchemes/nucleotide.html

index 4735bc4..8e2aa8b 100755 (executable)
--- a/help/html/colourSchemes/nucleotide.html
+++ b/help/html/colourSchemes/nucleotide.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/pid.html b/help/html/colourSchemes/pid.html

index 05b464c..c2a7b9f 100755 (executable)
--- a/help/html/colourSchemes/pid.html
+++ b/help/html/colourSchemes/pid.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/strand.html b/help/html/colourSchemes/strand.html

index a5842d8..79704ba 100755 (executable)
--- a/help/html/colourSchemes/strand.html
+++ b/help/html/colourSchemes/strand.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/taylor.html b/help/html/colourSchemes/taylor.html

index 605e25b..9202c85 100755 (executable)
--- a/help/html/colourSchemes/taylor.html
+++ b/help/html/colourSchemes/taylor.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/textcolour.html b/help/html/colourSchemes/textcolour.html

index a56d8e6..dc2b5ec 100644 (file)
--- a/help/html/colourSchemes/textcolour.html
+++ b/help/html/colourSchemes/textcolour.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/turn.html b/help/html/colourSchemes/turn.html

index 3bacbc9..98a25aa 100755 (executable)
--- a/help/html/colourSchemes/turn.html
+++ b/help/html/colourSchemes/turn.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html

index 2fc26e3..9617bee 100755 (executable)
--- a/help/html/colourSchemes/user.html
+++ b/help/html/colourSchemes/user.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/zappo.html b/help/html/colourSchemes/zappo.html

index 0b27f85..743ccb2 100755 (executable)
--- a/help/html/colourSchemes/zappo.html
+++ b/help/html/colourSchemes/zappo.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/editing/index.html b/help/html/editing/index.html

index 70776af..dc6164e 100755 (executable)
--- a/help/html/editing/index.html
+++ b/help/html/editing/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/annotation.html b/help/html/features/annotation.html

index 8d272af..7e0d23b 100755 (executable)
--- a/help/html/features/annotation.html
+++ b/help/html/features/annotation.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/annotationsFormat.html b/help/html/features/annotationsFormat.html

index 9beaa7c..38d17e2 100755 (executable)
--- a/help/html/features/annotationsFormat.html
+++ b/help/html/features/annotationsFormat.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/clarguments.html b/help/html/features/clarguments.html

index c8a594a..9ca64a6 100644 (file)
--- a/help/html/features/clarguments.html
+++ b/help/html/features/clarguments.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/codingfeatures.html b/help/html/features/codingfeatures.html

index 4de4f0c..b71404a 100644 (file)
--- a/help/html/features/codingfeatures.html
+++ b/help/html/features/codingfeatures.html
@@ -1,6 +1,6 @@
  <html>\r
  <!--\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)\r
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
   * \r
   * This file is part of Jalview.\r
diff --git a/help/html/features/commandline.html b/help/html/features/commandline.html

index f99e20c..b8f215b 100644 (file)
--- a/help/html/features/commandline.html
+++ b/help/html/features/commandline.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/creatinFeatures.html b/help/html/features/creatinFeatures.html

index b91e354..52d4399 100644 (file)
--- a/help/html/features/creatinFeatures.html
+++ b/help/html/features/creatinFeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/cursorMode.html b/help/html/features/cursorMode.html

index 67e88df..b98bf50 100755 (executable)
--- a/help/html/features/cursorMode.html
+++ b/help/html/features/cursorMode.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/dasfeatures.html b/help/html/features/dasfeatures.html

index 0d865b2..7b59a3d 100644 (file)
--- a/help/html/features/dasfeatures.html
+++ b/help/html/features/dasfeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/dassettings.html b/help/html/features/dassettings.html

index d8e7087..82aec55 100644 (file)
--- a/help/html/features/dassettings.html
+++ b/help/html/features/dassettings.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/editingFeatures.html b/help/html/features/editingFeatures.html

index 92aa214..f829df6 100644 (file)
--- a/help/html/features/editingFeatures.html
+++ b/help/html/features/editingFeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/featuresFormat.html b/help/html/features/featuresFormat.html

index 5641d90..b322e20 100755 (executable)
--- a/help/html/features/featuresFormat.html
+++ b/help/html/features/featuresFormat.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/featureschemes.html b/help/html/features/featureschemes.html

index 546c426..76bc154 100644 (file)
--- a/help/html/features/featureschemes.html
+++ b/help/html/features/featureschemes.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/featuresettings.html b/help/html/features/featuresettings.html

index 19006e5..6a2d157 100755 (executable)
--- a/help/html/features/featuresettings.html
+++ b/help/html/features/featuresettings.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/groovy.html b/help/html/features/groovy.html

index 2b7a303..d9aa13f 100644 (file)
--- a/help/html/features/groovy.html
+++ b/help/html/features/groovy.html
@@ -1,6 +1,6 @@
  <html>\r
  <!--\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)\r
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
   * \r
   * This file is part of Jalview.\r
diff --git a/help/html/features/hiddenRegions.html b/help/html/features/hiddenRegions.html

index 015b5b1..046a326 100644 (file)
--- a/help/html/features/hiddenRegions.html
+++ b/help/html/features/hiddenRegions.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/jalarchive.html b/help/html/features/jalarchive.html

index c501ed9..c26393f 100755 (executable)
--- a/help/html/features/jalarchive.html
+++ b/help/html/features/jalarchive.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/jmol.html b/help/html/features/jmol.html

index fb93bea..6aa2eaf 100644 (file)
--- a/help/html/features/jmol.html
+++ b/help/html/features/jmol.html
@@ -1,6 +1,6 @@
  <html>\r
  <!--\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)\r
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
   * \r
   * This file is part of Jalview.\r
diff --git a/help/html/features/multipleViews.html b/help/html/features/multipleViews.html

index 17b6fce..106cf4b 100644 (file)
--- a/help/html/features/multipleViews.html
+++ b/help/html/features/multipleViews.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/newkeystrokes.html b/help/html/features/newkeystrokes.html

index 69e175f..af2750c 100644 (file)
--- a/help/html/features/newkeystrokes.html
+++ b/help/html/features/newkeystrokes.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/overview.html b/help/html/features/overview.html

index 471b7be..a0aa3af 100755 (executable)
--- a/help/html/features/overview.html
+++ b/help/html/features/overview.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/pdbviewer.html b/help/html/features/pdbviewer.html

index 67dbc43..5c81f40 100755 (executable)
--- a/help/html/features/pdbviewer.html
+++ b/help/html/features/pdbviewer.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/preferences.html b/help/html/features/preferences.html

index cc45784..03b4993 100755 (executable)
--- a/help/html/features/preferences.html
+++ b/help/html/features/preferences.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/search.html b/help/html/features/search.html

index 956ab12..8173f32 100755 (executable)
--- a/help/html/features/search.html
+++ b/help/html/features/search.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/seqfeatures.html b/help/html/features/seqfeatures.html

index d9d51ae..d47a472 100755 (executable)
--- a/help/html/features/seqfeatures.html
+++ b/help/html/features/seqfeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/seqfetch.html b/help/html/features/seqfetch.html

index a51aa95..c32d8fe 100755 (executable)
--- a/help/html/features/seqfetch.html
+++ b/help/html/features/seqfetch.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/seqmappings.html b/help/html/features/seqmappings.html

index 808286c..0137634 100644 (file)
--- a/help/html/features/seqmappings.html
+++ b/help/html/features/seqmappings.html
@@ -1,6 +1,6 @@
  <html>\r
  <!--\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)\r
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
   * \r
   * This file is part of Jalview.\r
diff --git a/help/html/features/viewingpdbs.html b/help/html/features/viewingpdbs.html

index 71c2011..ad78549 100755 (executable)
--- a/help/html/features/viewingpdbs.html
+++ b/help/html/features/viewingpdbs.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/wrap.html b/help/html/features/wrap.html

index 201ff06..bbb15bb 100755 (executable)
--- a/help/html/features/wrap.html
+++ b/help/html/features/wrap.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/index.html b/help/html/index.html

index 676af1a..cedc202 100755 (executable)
--- a/help/html/index.html
+++ b/help/html/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/export.html b/help/html/io/export.html

index 1860b4a..bd0f708 100755 (executable)
--- a/help/html/io/export.html
+++ b/help/html/io/export.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/fileformats.html b/help/html/io/fileformats.html

index 95a6d71..f701dd0 100755 (executable)
--- a/help/html/io/fileformats.html
+++ b/help/html/io/fileformats.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/index.html b/help/html/io/index.html

index cf7dbfb..0cadedc 100755 (executable)
--- a/help/html/io/index.html
+++ b/help/html/io/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/modellerpir.html b/help/html/io/modellerpir.html

index c5839ad..143d2e4 100755 (executable)
--- a/help/html/io/modellerpir.html
+++ b/help/html/io/modellerpir.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/jalviewjnlp.html b/help/html/jalviewjnlp.html

index f821c23..70cab61 100755 (executable)
--- a/help/html/jalviewjnlp.html
+++ b/help/html/jalviewjnlp.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
@@ -66,7 +66,7 @@
                 &lt;jar href="wsdl4j.jar"/&gt;
                 &lt;jar href="xercesImpl.jar"/&gt;
                 &lt;jar href="xml-apis.jar"/&gt;
-               &lt;property name="jalview.version" value="2.6"/&gt;
+               &lt;property name="jalview.version" value="2.6.1"/&gt;
    &lt;/resources&gt;
    &lt;application-desc main-class="jalview.bin.Jalview"/&gt;
  &lt;/jnlp&gt;
diff --git a/help/html/keys.html b/help/html/keys.html

index 3787710..4404da4 100755 (executable)
--- a/help/html/keys.html
+++ b/help/html/keys.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/memory.html b/help/html/memory.html

index ed005bd..857c29a 100755 (executable)
--- a/help/html/memory.html
+++ b/help/html/memory.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
@@ -47,7 +47,7 @@ The way you increase the memory settings for the JVM depends on which installati
        need to <a href="jalviewjnlp.html">make your own jnlp file</a> and add the following parameter into the
        &lt;resources&gt; element.
      <pre>
-&lt;j2se version="1.4+" initial-heap-size="500M" max-heap-size="1000M"/&gt;
+&lt;j2se version="1.5+" initial-heap-size="500M" max-heap-size="1000M"/&gt;
  </pre>
      Save the jnlp file somewhere and then - if you start Jalview through your
      web browser, point your browser at the file's url, othewise simply run javaws
diff --git a/help/html/menus/alignmentMenu.html b/help/html/menus/alignmentMenu.html

index 06384f6..8156e93 100755 (executable)
--- a/help/html/menus/alignmentMenu.html
+++ b/help/html/menus/alignmentMenu.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwannotations.html b/help/html/menus/alwannotations.html

index 89a8286..b604c89 100755 (executable)
--- a/help/html/menus/alwannotations.html
+++ b/help/html/menus/alwannotations.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwcalculate.html b/help/html/menus/alwcalculate.html

index 451fb09..85ec95c 100755 (executable)
--- a/help/html/menus/alwcalculate.html
+++ b/help/html/menus/alwcalculate.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwcolour.html b/help/html/menus/alwcolour.html

index 7f4f317..10ec9c7 100755 (executable)
--- a/help/html/menus/alwcolour.html
+++ b/help/html/menus/alwcolour.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwedit.html b/help/html/menus/alwedit.html

index d010c6c..9710de1 100755 (executable)
--- a/help/html/menus/alwedit.html
+++ b/help/html/menus/alwedit.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwfile.html b/help/html/menus/alwfile.html

index c300cfb..fd2ebe5 100755 (executable)
--- a/help/html/menus/alwfile.html
+++ b/help/html/menus/alwfile.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwformat.html b/help/html/menus/alwformat.html

index 98a1abe..d7e8908 100644 (file)
--- a/help/html/menus/alwformat.html
+++ b/help/html/menus/alwformat.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwselect.html b/help/html/menus/alwselect.html

index b84733a..31809a2 100644 (file)
--- a/help/html/menus/alwselect.html
+++ b/help/html/menus/alwselect.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html

index 46df611..75e3904 100755 (executable)
--- a/help/html/menus/alwview.html
+++ b/help/html/menus/alwview.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/desktopMenu.html b/help/html/menus/desktopMenu.html

index 5b06f55..e108ded 100755 (executable)
--- a/help/html/menus/desktopMenu.html
+++ b/help/html/menus/desktopMenu.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/index.html b/help/html/menus/index.html

index f423b47..fa2b1a5 100755 (executable)
--- a/help/html/menus/index.html
+++ b/help/html/menus/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html

index 61063ed..4f66696 100755 (executable)
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/wsmenu.html b/help/html/menus/wsmenu.html

index 8c85b93..bac5a96 100755 (executable)
--- a/help/html/menus/wsmenu.html
+++ b/help/html/menus/wsmenu.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/misc/aaproperties.html b/help/html/misc/aaproperties.html

index 09e0e0a..2a4266a 100755 (executable)
--- a/help/html/misc/aaproperties.html
+++ b/help/html/misc/aaproperties.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/misc/aminoAcids.html b/help/html/misc/aminoAcids.html

index 3a4cdf1..7b7e6c4 100755 (executable)
--- a/help/html/misc/aminoAcids.html
+++ b/help/html/misc/aminoAcids.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/misc/geneticCode.html b/help/html/misc/geneticCode.html

index 07922cf..967b0ed 100755 (executable)
--- a/help/html/misc/geneticCode.html
+++ b/help/html/misc/geneticCode.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/privacy.html b/help/html/privacy.html

index 01ad39c..f46b528 100644 (file)
--- a/help/html/privacy.html
+++ b/help/html/privacy.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/vamsas/index.html b/help/html/vamsas/index.html

index 013e0ca..e91d114 100644 (file)
--- a/help/html/vamsas/index.html
+++ b/help/html/vamsas/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/JABAWS.html b/help/html/webServices/JABAWS.html

index e54d5dd..867299a 100644 (file)
--- a/help/html/webServices/JABAWS.html
+++ b/help/html/webServices/JABAWS.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/clustalw.html b/help/html/webServices/clustalw.html

index 120a186..81ccc4e 100755 (executable)
--- a/help/html/webServices/clustalw.html
+++ b/help/html/webServices/clustalw.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/dbreffetcher.html b/help/html/webServices/dbreffetcher.html

index 23d6991..1a03352 100644 (file)
--- a/help/html/webServices/dbreffetcher.html
+++ b/help/html/webServices/dbreffetcher.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">\r
  <!--\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)\r
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
   * \r
   * This file is part of Jalview.\r
diff --git a/help/html/webServices/index.html b/help/html/webServices/index.html

index a12d7b3..939db64 100755 (executable)
--- a/help/html/webServices/index.html
+++ b/help/html/webServices/index.html
@@ -1,6 +1,6 @@
  
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/jnet.html b/help/html/webServices/jnet.html

index 3537554..79320f0 100755 (executable)
--- a/help/html/webServices/jnet.html
+++ b/help/html/webServices/jnet.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/mafft.html b/help/html/webServices/mafft.html

index d3dd142..052e565 100644 (file)
--- a/help/html/webServices/mafft.html
+++ b/help/html/webServices/mafft.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/msaclient.html b/help/html/webServices/msaclient.html

index a203849..0d413fc 100644 (file)
--- a/help/html/webServices/msaclient.html
+++ b/help/html/webServices/msaclient.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/muscle.html b/help/html/webServices/muscle.html

index 04fe696..1a3de9f 100755 (executable)
--- a/help/html/webServices/muscle.html
+++ b/help/html/webServices/muscle.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/urllinks.html b/help/html/webServices/urllinks.html

index 649cc67..842cc90 100644 (file)
--- a/help/html/webServices/urllinks.html
+++ b/help/html/webServices/urllinks.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/webServicesParams.html b/help/html/webServices/webServicesParams.html

index 714dd5c..3bec481 100644 (file)
--- a/help/html/webServices/webServicesParams.html
+++ b/help/html/webServices/webServicesParams.html
@@ -1,6 +1,6 @@
  
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/webServicesPrefs.html b/help/html/webServices/webServicesPrefs.html

index a581761..2d5d3ee 100644 (file)
--- a/help/html/webServices/webServicesPrefs.html
+++ b/help/html/webServices/webServicesPrefs.html
@@ -1,6 +1,6 @@
  
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6.1)
   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   * 
   * This file is part of Jalview.
author	jprocter <Jim Procter>
	Mon, 15 Nov 2010 11:00:40 +0000 (11:00 +0000)
committer	jprocter <Jim Procter>
	Mon, 15 Nov 2010 11:00:40 +0000 (11:00 +0000)
help/helpTOC.xml		patch \| blob \| history
help/html/calculations/consensus.html		patch \| blob \| history
help/html/calculations/conservation.html		patch \| blob \| history
help/html/calculations/pairwise.html		patch \| blob \| history
help/html/calculations/pca.html		patch \| blob \| history
help/html/calculations/quality.html		patch \| blob \| history
help/html/calculations/recoverInputdata.html		patch \| blob \| history
help/html/calculations/redundancy.html		patch \| blob \| history
help/html/calculations/sorting.html		patch \| blob \| history
help/html/calculations/tree.html		patch \| blob \| history
help/html/calculations/treeviewer.html		patch \| blob \| history
help/html/colourSchemes/abovePID.html		patch \| blob \| history
help/html/colourSchemes/annotationColouring.html		patch \| blob \| history
help/html/colourSchemes/blosum.html		patch \| blob \| history
help/html/colourSchemes/buried.html		patch \| blob \| history
help/html/colourSchemes/clustal.html		patch \| blob \| history
help/html/colourSchemes/conservation.html		patch \| blob \| history
help/html/colourSchemes/helix.html		patch \| blob \| history
help/html/colourSchemes/hydrophobic.html		patch \| blob \| history
help/html/colourSchemes/index.html		patch \| blob \| history
help/html/colourSchemes/nucleotide.html		patch \| blob \| history
help/html/colourSchemes/pid.html		patch \| blob \| history
help/html/colourSchemes/strand.html		patch \| blob \| history
help/html/colourSchemes/taylor.html		patch \| blob \| history
help/html/colourSchemes/textcolour.html		patch \| blob \| history
help/html/colourSchemes/turn.html		patch \| blob \| history
help/html/colourSchemes/user.html		patch \| blob \| history
help/html/colourSchemes/zappo.html		patch \| blob \| history
help/html/editing/index.html		patch \| blob \| history
help/html/features/annotation.html		patch \| blob \| history
help/html/features/annotationsFormat.html		patch \| blob \| history
help/html/features/clarguments.html		patch \| blob \| history
help/html/features/codingfeatures.html		patch \| blob \| history
help/html/features/commandline.html		patch \| blob \| history
help/html/features/creatinFeatures.html		patch \| blob \| history
help/html/features/cursorMode.html		patch \| blob \| history
help/html/features/dasfeatures.html		patch \| blob \| history
help/html/features/dassettings.html		patch \| blob \| history
help/html/features/editingFeatures.html		patch \| blob \| history
help/html/features/featuresFormat.html		patch \| blob \| history
help/html/features/featureschemes.html		patch \| blob \| history
help/html/features/featuresettings.html		patch \| blob \| history
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