(JAL-812) javadoc and api method to relayout annotation panel after annotation is...

diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java
index d971acb..70bb3d6 100644 (file)
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -31,5 +31,15 @@ public interface AlignmentViewPanel extends OOMHandlerI
 
   AlignmentI getAlignment();
   StructureSelectionManager getStructureSelectionManager();
-  void paintAlignment(boolean b);
+  /**
+   * repaint the alignment view after a datamodel update.
+   * @param updateOverview - if true, the overview panel will also be updated and repainted 
+   */
+  
+  void paintAlignment(boolean updateOverview);
+  /**
+   * automatically adjust annotation panel height for new annotation
+   * whilst ensuring the alignment is still visible.
+   */
+  void adjustAnnotationHeight();
 }