-
-<h1>Embedded viewing of Alignments</h1>
+<h2>Embedded viewing of Alignments</h2>
<p>The alignment below was generated from the following files:
<ul>
<li><a href="plantfdx.fa">plantfdx.fa</a> - Alignment file in
-
+<h2>Structure and Alignment</h2>
+<p>This demo shows how JalviewLite and Jmol can be integrated with the JalviewLite javascript library.</p>
<center>
<script>
jmolApplet("500x500","zap; load FILE '1gaq.txt'; frame 0; select all; wireframe off; spacefill off; cartoons; restrict; center *; set selectionhalos true;select 0","jmolView");
<p align="left">
- Try out JalviewLite by pressing one of the buttons below. For more information on how to use the applet in your website, see the <a
- href="appletParameters.html"><strong>applet parameters</strong></a> and other documentation in the links to the left.</p>
+<h2>JalviewLite Button Examples</h2>
+Try out JalviewLite by pressing one of the buttons below.<br/>
+ For more information on how to use the applet in your website, see the <a href="appletParameters.html"><strong>applet parameters</strong></a> and other documentation in the links to the left.</p>
<div align="center">
<p>
<h2>Ferredoxins, chloroplast precursor related UniRef50
secondary structure annotation</td>
</tr>
</table>
-</div>
\ No newline at end of file
+</div>
-<strong>Using the <a href="jalviewLiteJs.html">JalviewLite API</a> to fill out forms using data from JalviewLite<br/></strong>
-Click the Javascript buttons below to interact with the Applet
-instance on the page.<br/>
+<h2><a href="jalviewLiteJs.html">JalviewLite API</a> Demo</h2>
+<p>Using the Javascript API to fill out forms using data from JalviewLite
+<br/>Click the Javascript buttons below to interact with the Applet
+instance on the page.</p>
View the source in your browser to see how it has been done. <br/>
<a name="api">View the full <a href="jalviewLiteJs.html">JalviewLite API documentation</a>.</a>
<applet code="jalview.bin.JalviewLite" width="0" height="0"
</#if>
</applet>
+<h2>Javascript Launch Button</h2><p>The button below demonstrates how JalviewLite can be launched via a javascript action.</p>
<input type="button" name="Button1" value="Start"
onClick="startJalview('plantfdx.fa','Button1.alignment','alwvar')"/>
linkJvJmol(jvfollower);
};
</script>
- <strong>JalviewLite Linked Applets Demo<br></strong>
+ <h2>JalviewLite Linked Applets Demo</h2>
<p>The two applets below use <a href="jalviewLiteJs.html">JalviewLite's javascript API</a> to exchange events about the currently selected region and mouse position in the alignment.
</p>
<script>