JAL-1397 make sure annotation colourscheme is up to date after loading the project

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 0a0b169..45e8102 100644 (file)
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -3487,6 +3487,7 @@ public class Jalview2XML
             view.getHeight());
     af.alignPanel.updateAnnotation(false, true); // recompute any autoannotation
     reorderAutoannotation(af, al, autoAlan);
+    af.alignPanel.alignmentChanged();
     return af;
   }