Clear highlighted residues

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 117dd14..cf4c40d 100755 (executable)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -648,6 +648,7 @@ public class AlignFrame extends Frame
     viewport.setSelectionGroup(null);\r
     viewport.getColumnSelection().clear();\r
     viewport.setSelectionGroup(null);\r
+    alignPanel.seqPanel.seqCanvas.highlightSearchResults(null);\r
     alignPanel.repaint();\r
     PaintRefresher.Refresh(null, viewport.alignment);\r
   }\r

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 210c44f..8c31ed0 100755 (executable)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -978,6 +978,7 @@ public class AlignFrame
     viewport.setSelectionGroup(null);\r
     viewport.getColumnSelection().clear();\r
     viewport.setSelectionGroup(null);\r
+    alignPanel.seqPanel.seqCanvas.highlightSearchResults(null);\r
     alignPanel.annotationPanel.activeRes = null;\r
     PaintRefresher.Refresh(null, viewport.alignment);\r
   }\r