ensure all colour statements added to string set

diff --git a/src/jalview/ext/jmol/JmolCommands.java b/src/jalview/ext/jmol/JmolCommands.java
index acf27f6..0e6cac3 100644 (file)
--- a/src/jalview/ext/jmol/JmolCommands.java
+++ b/src/jalview/ext/jmol/JmolCommands.java
@@ -99,6 +99,11 @@ public class JmolCommands
         }\r
       }\r
     }\r
+    {\r
+      // add final chunk\r
+      str.add(command.toString());\r
+      command.setLength(0);\r
+    }\r
     return str.toArray(new String[str.size()]);\r
   }\r
 \r