New files

diff --git a/src/jalview/jbgui/GConservationIncrementPanel.java b/src/jalview/jbgui/GConservationIncrementPanel.java
new file mode 100755 (executable)
index 0000000..1ca6d05
--- /dev/null
+++ b/src/jalview/jbgui/GConservationIncrementPanel.java
@@ -0,0 +1,65 @@
+package jalview.jbgui;
+
+import java.awt.*;
+import javax.swing.*;
+import java.awt.event.*;
+
+public class GConservationIncrementPanel extends JPanel
+{
+  protected JSlider slider = new JSlider();
+  protected JTextField valueField = new JTextField();
+  JLabel jLabel1 = new JLabel();
+  JPanel jPanel1 = new JPanel();
+  BorderLayout borderLayout1 = new BorderLayout();
+  GridLayout gridLayout1 = new GridLayout();
+
+  public GConservationIncrementPanel()
+  {
+    try
+    {
+      jbInit();
+    }
+    catch(Exception e)
+    {
+      e.printStackTrace();
+    }
+  }
+  private void jbInit() throws Exception
+  {
+    this.setLayout(gridLayout1);
+    slider.setMajorTickSpacing(10);
+    slider.setMaximum(50);
+    slider.setMinorTickSpacing(1);
+    slider.setPaintTicks(true);
+    slider.setBackground(new Color(212, 208, 236));
+    slider.setFont(new java.awt.Font("Verdana", 0, 11));
+    valueField.setFont(new java.awt.Font("Verdana", 0, 11));
+    valueField.setMinimumSize(new Dimension(6, 21));
+    valueField.setPreferredSize(new Dimension(60, 21));
+    valueField.setText("");
+    valueField.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        valueField_actionPerformed(e);
+      }
+    });
+    jLabel1.setBackground(new Color(212, 208, 236));
+    jLabel1.setFont(new java.awt.Font("Verdana", 0, 11));
+    jLabel1.setOpaque(true);
+    jLabel1.setHorizontalAlignment(SwingConstants.CENTER);
+    jLabel1.setText("Enter the value by which to decrease conservation colour intensity");
+    jPanel1.setLayout(borderLayout1);
+    gridLayout1.setRows(2);
+    this.add(jLabel1, null);
+    this.add(jPanel1, null);
+    jPanel1.add(valueField,  BorderLayout.EAST);
+    jPanel1.add(slider, BorderLayout.CENTER);
+  }
+
+  protected void valueField_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+}

diff --git a/src/jalview/jbgui/GGroupEditor.java b/src/jalview/jbgui/GGroupEditor.java
new file mode 100755 (executable)
index 0000000..d99c31d
--- /dev/null
+++ b/src/jalview/jbgui/GGroupEditor.java
@@ -0,0 +1,274 @@
+package jalview.jbgui;
+
+import java.awt.*;
+import javax.swing.*;
+import java.awt.event.*;
+import javax.swing.border.*;
+
+public class GGroupEditor extends JPanel
+{
+  protected JList assignedList = new JList();
+  protected JComboBox groupsCombo = new JComboBox();
+  protected JList unassignedList = new JList();
+  JButton add = new JButton();
+  JButton addAll = new JButton();
+  JButton remove = new JButton();
+  JButton removeAll = new JButton();
+  JPanel jPanel1 = new JPanel();
+  GridLayout gridLayout1 = new GridLayout();
+  TitledBorder titledBorder1;
+  TitledBorder titledBorder2;
+  JPanel jPanel2 = new JPanel();
+  BorderLayout borderLayout1 = new BorderLayout();
+  JButton addGroup = new JButton();
+  JButton deleteGroup = new JButton();
+  JButton addSelectedIds = new JButton();
+  protected JCheckBox textCheck = new JCheckBox();
+  protected JCheckBox colourTextCheck = new JCheckBox();
+  protected JCheckBox boxesCheck = new JCheckBox();
+  protected JComboBox colourCombo = new JComboBox();
+  JPanel jPanel3 = new JPanel();
+  GridLayout gridLayout2 = new GridLayout();
+  JScrollPane jScrollPane1 = new JScrollPane();
+  JScrollPane jScrollPane2 = new JScrollPane();
+  JButton groupName = new JButton();
+
+  public GGroupEditor()
+  {
+    try
+    {
+      jbInit();
+    }
+    catch(Exception e)
+    {
+      e.printStackTrace();
+    }
+  }
+  private void jbInit() throws Exception
+  {
+    titledBorder1 = new TitledBorder("Unassigned Sequences");
+    titledBorder2 = new TitledBorder("Current Groups");
+    this.setLayout(null);
+    unassignedList.setFont(new java.awt.Font("Verdana", 0, 10));
+    unassignedList.setBorder(titledBorder1);
+    add.setFont(new java.awt.Font("Verdana", 0, 10));
+    add.setText("Add to group");
+    add.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        add_actionPerformed(e);
+      }
+    });
+    addAll.setFont(new java.awt.Font("Verdana", 0, 10));
+    addAll.setText("Add all to group");
+    addAll.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        addAll_actionPerformed(e);
+      }
+    });
+    remove.setFont(new java.awt.Font("Verdana", 0, 10));
+    remove.setText("Remove from group");
+    remove.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        remove_actionPerformed(e);
+      }
+    });
+    removeAll.setFont(new java.awt.Font("Verdana", 0, 10));
+    removeAll.setMargin(new Insets(0, 0, 0, 0));
+    removeAll.setText("Remove all from group");
+    removeAll.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        removeAll_actionPerformed(e);
+      }
+    });
+    jPanel1.setBounds(new Rectangle(265, 82, 169, 108));
+    jPanel1.setLayout(gridLayout1);
+    gridLayout1.setRows(4);
+    jPanel2.setFont(new java.awt.Font("Verdana", 0, 10));
+    jPanel2.setBorder(titledBorder2);
+    jPanel2.setBounds(new Rectangle(4, 3, 257, 369));
+    jPanel2.setLayout(borderLayout1);
+    addGroup.setBounds(new Rectangle(265, 259, 166, 25));
+    addGroup.setFont(new java.awt.Font("Verdana", 0, 10));
+    addGroup.setText("Add new group");
+    addGroup.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        addGroup_actionPerformed(e);
+      }
+    });
+    deleteGroup.setBounds(new Rectangle(266, 285, 163, 25));
+    deleteGroup.setFont(new java.awt.Font("Verdana", 0, 10));
+    deleteGroup.setText("Delete selected group");
+    deleteGroup.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        deleteGroup_actionPerformed(e);
+      }
+    });
+    addSelectedIds.setBounds(new Rectangle(268, 37, 160, 25));
+    addSelectedIds.setFont(new java.awt.Font("Verdana", 0, 10));
+    addSelectedIds.setText("Add selected ids");
+    addSelectedIds.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        addSelectedIds_actionPerformed(e);
+      }
+    });
+    textCheck.setFont(new java.awt.Font("Verdana", 0, 10));
+    textCheck.setText("Display text");
+    textCheck.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        textCheck_actionPerformed(e);
+      }
+    });
+    colourTextCheck.setFont(new java.awt.Font("Verdana", 0, 10));
+    colourTextCheck.setText("Colour text");
+    colourTextCheck.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        colourTextCheck_actionPerformed(e);
+      }
+    });
+    boxesCheck.setFont(new java.awt.Font("Verdana", 0, 10));
+    boxesCheck.setText("Display boxes");
+    boxesCheck.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        boxesCheck_actionPerformed(e);
+      }
+    });
+    jPanel3.setLayout(gridLayout2);
+    gridLayout2.setRows(4);
+    colourCombo.setFont(new java.awt.Font("Verdana", 0, 10));
+    colourCombo.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        colourCombo_actionPerformed(e);
+      }
+    });
+    assignedList.setFont(new java.awt.Font("Verdana", 0, 10));
+    groupsCombo.setFont(new java.awt.Font("Verdana", 0, 10));
+    groupsCombo.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        groupsCombo_actionPerformed(e);
+      }
+    });
+    this.setBackground(Color.lightGray);
+    jScrollPane1.setBounds(new Rectangle(437, 6, 257, 367));
+    groupName.setBounds(new Rectangle(266, 232, 166, 25));
+    groupName.setFont(new java.awt.Font("Verdana", 0, 10));
+    groupName.setVerifyInputWhenFocusTarget(true);
+    groupName.setText("Edit group name");
+    groupName.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        groupName_actionPerformed(e);
+      }
+    });
+    jPanel1.add(add, null);
+    jPanel1.add(addAll, null);
+    jPanel1.add(remove, null);
+    jPanel1.add(removeAll, null);
+    this.add(addSelectedIds, null);
+    this.add(jPanel1, null);
+    this.add(jPanel2, null);
+    jPanel3.add(colourCombo, null);
+    jPanel3.add(boxesCheck, null);
+    jPanel3.add(textCheck, null);
+    jPanel3.add(colourTextCheck, null);
+    this.add(jScrollPane1, null);
+    this.add(addGroup, null);
+    this.add(deleteGroup, null);
+    this.add(groupName, null);
+    jScrollPane1.getViewport().add(unassignedList, null);
+    jPanel2.add(jScrollPane2, BorderLayout.CENTER);
+    jPanel2.add(groupsCombo, BorderLayout.NORTH);
+    jPanel2.add(jPanel3, BorderLayout.SOUTH);
+    jScrollPane2.getViewport().add(assignedList, null);
+  }
+
+  protected void add_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void groupsCombo_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void colourCombo_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void boxesCheck_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void textCheck_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void colourTextCheck_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void addSelectedIds_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void addAll_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void remove_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void removeAll_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void addGroup_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  protected void deleteGroup_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+
+  protected void groupName_actionPerformed(ActionEvent e)
+  {
+
+  }
+}