JAL-3144 spelling, Javadoc, abstract method for JalviewJS

diff --git a/src/jalview/fts/core/GFTSPanel.java b/src/jalview/fts/core/GFTSPanel.java
index 557b713..4771601 100644 (file)
--- a/src/jalview/fts/core/GFTSPanel.java
+++ b/src/jalview/fts/core/GFTSPanel.java
@@ -592,7 +592,6 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI
 
     txt_search.addActionListener(new ActionListener()
     {
-
       @Override
       public void actionPerformed(ActionEvent e)
       {
@@ -921,7 +920,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI
     lbl_blank.setVisible(true);
     btn_ok.setEnabled(false);
     mainFrame.setTitle(getFTSFrameTitle());
-    referesh();
+    refresh();
     tbl_summary.setModel(new DefaultTableModel());
     tbl_summary.setVisible(false);
   }
@@ -1058,9 +1057,11 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI
     }
   }
 
-  public void referesh()
+  public void refresh()
   {
     mainFrame.setTitle(getFTSFrameTitle());
   }
 
+  @Override
+  public abstract void okAction();
 }

diff --git a/src/jalview/gui/SequenceFetcher.java b/src/jalview/gui/SequenceFetcher.java
index 8037fed..f9d7760 100755 (executable)
--- a/src/jalview/gui/SequenceFetcher.java
+++ b/src/jalview/gui/SequenceFetcher.java
@@ -331,7 +331,7 @@ public class SequenceFetcher extends JPanel implements Runnable
   }
 
   /**
-   * Action on selected a database other than Uniprot or PDB is to enable or
+   * Action on selecting a database other than Uniprot or PDB is to enable or
    * disable 'Replace commas', and await input in the query field
    */
   protected void otherSourceAction()
@@ -340,8 +340,7 @@ public class SequenceFetcher extends JPanel implements Runnable
     {
       String eq = exampleAccession.getText();
       // TODO this should be a property of the SequenceFetcher whether commas
-      // are and
-      // colons are allowed in the IDs...
+      // are allowed in the IDs...
 
       boolean enablePunct = !(eq != null && eq.indexOf(",") > -1);
       replacePunctuation.setEnabled(enablePunct);