JMenuItem modifyPID = new JMenuItem();\r
JMenuItem modifyConservation = new JMenuItem();\r
protected JMenu sortByTreeMenu = new JMenu();\r
- JMenu sort = new JMenu();\r
+ protected JMenu sort = new JMenu();\r
JMenu calculate = new JMenu();\r
JMenuItem msaAlignMenuItem = new JMenuItem();\r
JMenu jMenu2 = new JMenu();\r
+ JMenuItem padGapsMenuitem = new JMenuItem();\r
public GAlignFrame()\r
{\r
ButtonGroup colours = new ButtonGroup();\r
}\r
});\r
jMenu2.setText("Export");\r
+ padGapsMenuitem.setText("Pad Gaps");\r
+ padGapsMenuitem.addActionListener(new ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ padGapsMenuitem_actionPerformed(e);\r
+ }\r
+ });\r
alignFrameMenuBar.add(fileMenu);\r
alignFrameMenuBar.add(editMenu);\r
alignFrameMenuBar.add(searchMenu);\r
editMenu.add(removeGappedColumnMenuItem);\r
editMenu.add(removeAllGapsMenuItem);\r
editMenu.add(removeRedundancyMenuItem);\r
+ editMenu.addSeparator();\r
+ editMenu.add(padGapsMenuitem);\r
searchMenu.add(findMenuItem);\r
viewMenu.add(font);\r
viewMenu.addSeparator();\r
jMenu1.add(pasteNew);\r
jMenu1.add(pasteThis);\r
sort.add(sortIDMenuItem);\r
- sort.add(sortByTreeMenu);\r
sort.add(sortGroupMenuItem);\r
sort.add(sortPairwiseMenuItem);\r
calculate.add(averageDistanceTreeMenuItem);\r
\r
}\r
\r
- public void alignFrameMenuBar_ancestorAdded(AncestorEvent event)\r
+ protected void alignFrameMenuBar_ancestorAdded(AncestorEvent event)\r
+ {\r
+\r
+ }\r
+\r
+ protected void saveAlignmentMenu_actionPerformed(ActionEvent e)\r
{\r
\r
}\r
\r
- public void saveAlignmentMenu_actionPerformed(ActionEvent e)\r
+ protected void padGapsMenuitem_actionPerformed(ActionEvent e)\r
{\r
\r
}\r