Add transparency

diff --git a/src/jalview/appletgui/FeatureRenderer.java b/src/jalview/appletgui/FeatureRenderer.java
index 551dea7..0f9f393 100755 (executable)
--- a/src/jalview/appletgui/FeatureRenderer.java
+++ b/src/jalview/appletgui/FeatureRenderer.java
@@ -400,10 +400,10 @@ public class FeatureRenderer
   {\r
     void setTransparency(Graphics g, float value)\r
     {\r
-  //    Graphics2D g2 = (Graphics2D) g;\r
-   //   g2.setComposite(\r
-    //      AlphaComposite.getInstance(\r
-    //          AlphaComposite.SRC_OVER, value));\r
+      Graphics2D g2 = (Graphics2D) g;\r
+      g2.setComposite(\r
+          AlphaComposite.getInstance(\r
+              AlphaComposite.SRC_OVER, value));\r
     }\r
   }\r
 \r