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+<h1 id="building-jalview-from-source">Building Jalview from Source</h1>
+<h2 id="what-you-will-need">What you will need</h2>
+<p>The method here is described in terms of using a command line. You can easily do this on linux or in a Terminal window in macOS. You can do it in Windows.</p>
+<ul>
+<li>Java 11 compliant JDK</li>
+<li>gradle 5.1 or above</li>
+<li>git</li>
+</ul>
+<h3 id="java-11-jdk">Java 11 JDK</h3>
+<p>We recommend obtaining an OpenJDK JDK 11 from AdoptOpenJDK: <a href="https://adoptopenjdk.net/?variant=openjdk11&jvmVariant=hotspot" class="uri">https://adoptopenjdk.net/?variant=openjdk11&jvmVariant=hotspot</a>, either the <em>Installer</em> or <code>.zip</code>/<code>.tar.gz</code> variants whichever you prefer (if you’re not sure, choose the <em>Installer</em>).</p>
+<h3 id="gradle-and-git"><code>gradle</code> and <code>git</code></h3>
+<p>You should be able to install the latest (or close to the latest) versions of gradle and git using your OS package manager.</p>
+<p>For <strong>macOS</strong> we recommend using <code>brew</code>, which can be installed following the instructions at <a href="https://brew.sh/" class="uri">https://brew.sh/</a>. After installing <code>brew</code>, open a Terminal window and type in (using an Administrator privileged user): <code>brew install gradle git</code> or <code>brew upgrade gradle git</code> if you already have them installed but need to upgrade the version.</p>
+<p>For <strong>linux</strong> this will depend on which distribution you’re using. For <em>debian</em> based distributions (e.g. Mint, Ubuntu, Debian) run <code>sudo apt-get install gradle git</code> whilst for RPM-based distributions run (probably) <code>sudo yum install gradle git</code> If you have some other version of linux you’ll probably be able to work it out!</p>
+<p>For <em>Windows</em> users, you might do well by using the <strong>Chocolatey</strong> package manager. See install instructions at <a href="https://chocolatey.org/" class="uri">https://chocolatey.org/</a>, and you will just need <code>choco install gradle git</code> Alternatively, you could install a real <code>bash</code> shell and install both <code>gradle</code> and <code>git</code> through <code>apt-get</code>. Another alternative would be to install them separately following the instructions at <a href="https://gradle.org/install/" class="uri">https://gradle.org/install/</a>, and for <code>git</code> here are a couple of suggestions: Git for Windows <a href="https://gitforwindows.org/" class="uri">https://gitforwindows.org/</a> or a real <code>bash</code>-shell <a href="https://devblogs.microsoft.com/commandline/bash-on-ubuntu-on-windows-download-now-3/" class="uri">https://devblogs.microsoft.com/commandline/bash-on-ubuntu-on-windows-download-now-3/</a> !</p>
+<h2 id="section"></h2>
+
+</body></html>
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--- /dev/null
+# Building Jalview from Source
+
+## What you will need
+
+The method here is described in terms of using a command line. You can easily do this on linux or in a Terminal window in macOS. You can do it in Windows.
+
+* Java 11 compliant JDK
+* gradle 5.1 or above
+* git
+
+### Java 11 JDK
+We recommend obtaining an OpenJDK JDK 11 from AdoptOpenJDK: <https://adoptopenjdk.net/?variant=openjdk11&jvmVariant=hotspot>, either the *Installer* or `.zip`/`.tar.gz` variants whichever you prefer (if you're not sure, choose the *Installer*).
+
+### gradle and git
+You should be able to install the latest (or close to the latest) versions of gradle and git using your OS package manager.
+
+For **macOS** we recommend using `brew`, which can be installed following the instructions at <https://brew.sh/>.
+After installing `brew`, open a Terminal window and type in (using an Administrator privileged user):
+
+```
+brew install gradle git
+```
+
+or
+
+```
+brew upgrade gradle git
+```
+
+if you already have them installed but need to upgrade the version.
+
+For **linux** this will depend on which distribution you're using.
+For *Debian* based distributions (e.g. Mint, Ubuntu, Debian) run
+
+```
+ sudo apt-get install gradle git
+```
+
+whilst for RPM-based distributions run (probably)
+
+```
+sudo yum install gradle git
+```
+
+If you have some other version of linux you'll probably be able to work it out!
+
+For **Windows** users, you will likely do well by using the **Chocolatey** package manager. See install instructions at <https://chocolatey.org/>, and you will just need
+
+```
+choco install gradle git
+```
+
+Alternatively, you could install a real `bash` shell and install both `gradle` and `git` through `apt-get`.
+Another alternative would be to install them separately following the instructions at <https://gradle.org/install/>, and for `git` here are a couple of suggestions: Git for Windows <https://gitforwindows.org/> or a real `bash`-shell <https://devblogs.microsoft.com/commandline/bash-on-ubuntu-on-windows-download-now-3/> !
+
+##
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git://source.jalview.org / jalview.git / commitdiff