- <!-- JAL-4315 --> Drag and drop feature colours file on an alignment to quickly apply feature settings
- <!-- JAL-3676 --> Allow log level configuration via Jalview's Java Console, and a Copy to Clipboard button
- <!-- JAL-4304,JAL-4305 --> Upgrade bundled groovy to v4.0.15 and regularised interface for groovy scripts run from CLI, interactively and headlessly.
+- <!-- JAL-1713,JAL-2528 --> Overview display and hidden region visibility stored in Jalview projects
### Development and Deployment
- <!-- JAL-4054 --> Installers built with install4j10
- <!-- JAL-4323 --> scripts adding new fileformats or colourschemes do not work when run via command line
- <!-- JAL-4290 --> Headless alignment export with structure annotations doesn't include secondary structure and temperature factor
- <!-- JAL-4151 --> Copy sequences from one alignment and Pasting as new window in another alignment doesn't propagate title from original alignment's window
+- <!-- JAL-4127 --> 'Reload' for a jalview project results in all windows being duplicated (since 2.11.2.6, more severe in 2.11.3.0)