<li><!-- JAL-2072 -->Feature based tree calculation not shown for DNA alignments</li>
<li><!-- JAL-2075 -->Hidden columns ignored during feature based tree calculation</li>
<li><!-- JAL-2065 -->Alignment view stops updating when show unconserved enabled for group on alignment</li>
-
+ <li><!-- JAL-2086 -->Cannot insert gaps into sequence when set as reference</li>
</ul>
<em>Application</em>
<li><!-- JAL-1552-->URLs and links can imported by drag'n'drop on OSX webstart</li>
<li><!-- JAL-2030-->InstallAnywhere distribution fails when launching Chimera</li>
<li><!-- JAL-2080-->Jalview very slow to launch via webstart (also hotfix for 2.9.0b2)</li>
+ <li><!-- JAL-2085 -->Cannot save project when view has a reference sequence defined</li>
<!-- may exclude, this is an external service stability issue JAL-1941 /> RNA 3D structure not added via DSSR service</li> -->
</ul>
<em>Applet</em>